ENCFF645FQS

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR525WFB
Description: Part of ENCODE experiment ENCSR525WFB. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 963.00 85.07 5.07 100.0 SNORD113-5-201 snoRNA transverse colon (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 116.00 96.67 0.61 100.0 MIR15A-201 miRNA transverse colon (Tissue)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 1.00 100.00 0.01 100.0 MIR376C-201 miRNA transverse colon (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 589.00 57.58 3.10 100.0 SNHG21-206 retained intron transverse colon (Tissue)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 169.00 80.09 0.89 100.0 SNORD11B-201 snoRNA transverse colon (Tissue)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 435.00 39.40 2.29 100.0 SNORD91B-201 snoRNA transverse colon (Tissue)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 1513.00 26.08 7.96 32.91 SNORD91A-201 snoRNA transverse colon (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 8823.00 49.06 46.44 98.48 MIR486-1-201 miRNA transverse colon (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 10973.00 49.59 57.76 67.95 NOP56-219 retained intron transverse colon (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 263.00 1.19 1.38 100.0 NOP56-219 retained intron transverse colon (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 1632.00 7.38 8.59 100.0 NOP56-219 retained intron transverse colon (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 1993.00 9.01 10.49 86.99 NOP56-219 retained intron transverse colon (Tissue)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 110.00 1.10 0.58 39.57 RNA5-8SN2-201 rRNA transverse colon (Tissue)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 1690.16 16.98 8.90 39.08 RNA5-8SN2-201 rRNA transverse colon (Tissue)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 12.00 0.12 0.06 100.0 RNA5-8SN2-201 rRNA transverse colon (Tissue)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 1092.00 10.97 5.75 100.0 RNA5-8SN2-201 rRNA transverse colon (Tissue)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 27.00 0.27 0.14 100.0 RNA5-8SN2-201 rRNA transverse colon (Tissue)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 290.00 2.91 1.53 72.5 RNA5-8SN2-201 rRNA transverse colon (Tissue)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 2479.70 24.91 13.05 57.33 RNA5-8SN2-201 rRNA transverse colon (Tissue)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 8.00 100.00 0.04 100.0 MIR7974-201 miRNA transverse colon (Tissue)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 492.00 4.37 2.59 100.0 U2.3-201 snRNA transverse colon (Tissue)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 223.53 1.98 1.18 32.26 U2.3-201 snRNA transverse colon (Tissue)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 3.00 0.03 0.02 100.0 U2.3-201 snRNA transverse colon (Tissue)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 4.00 0.04 0.02 100.0 U2.3-201 snRNA transverse colon (Tissue)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 19.00 0.17 0.10 38.0 U2.3-201 snRNA transverse colon (Tissue)