ENCFF645FQS

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR525WFB
Description: Part of ENCODE experiment ENCSR525WFB. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 1736.00 23.61 9.14 80.56 NSRP1-214 protein coding transverse colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 218.00 3.09 1.15 100.0 MIR23AHG-201 lncRNA transverse colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 1655.00 23.47 8.71 96.56 MIR23AHG-201 lncRNA transverse colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 1523.00 21.60 8.02 85.51 MIR23AHG-201 lncRNA transverse colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 1484.00 21.05 7.81 93.63 MIR23AHG-201 lncRNA transverse colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 774.00 10.98 4.07 74.57 MIR23AHG-201 lncRNA transverse colon (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 59.00 43.38 0.31 100.0 ODAD3-204 nonsense mediated decay transverse colon (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 3314.00 6.01 17.44 100.0 VMP1-217 retained intron transverse colon (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 103.00 0.19 0.54 100.0 VMP1-217 retained intron transverse colon (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 35311.00 64.06 185.87 73.79 VMP1-217 retained intron transverse colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 748.00 0.10 3.94 100.0 C19orf48P-203 retained intron transverse colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 595098.85 79.54 3132.41 82.32 C19orf48P-203 retained intron transverse colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 137159.72 18.33 721.97 18.48 C19orf48P-203 retained intron transverse colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 952.00 0.13 5.01 87.74 C19orf48P-203 retained intron transverse colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 108.00 0.01 0.57 100.0 C19orf48P-203 retained intron transverse colon (Tissue)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 9.00 0.00 0.05 100.0 C19orf48P-203 retained intron transverse colon (Tissue)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 177.00 38.31 0.93 100.0 RPS11-206 retained intron transverse colon (Tissue)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 185.00 40.04 0.97 100.0 RPS11-206 retained intron transverse colon (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 2709628.00 65.56 14262.63 67.26 CARMN-209 lncRNA transverse colon (Tissue)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 303.00 21.00 1.59 100.0 ENST00000602478 lncRNA transverse colon (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 576.00 45.53 3.03 100.0 PPFIA1P1-201 processed pseudogene transverse colon (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 489.00 58.63 2.57 100.0 SNORD114-21-201 snoRNA transverse colon (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 148.00 17.75 0.78 100.0 SNORD114-21-201 snoRNA transverse colon (Tissue)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 62.00 72.94 0.33 100.0 SNORD115-40-201 snoRNA transverse colon (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 3134.00 98.43 16.50 100.0 MIR98-201 miRNA transverse colon (Tissue)