ENCFF645FQS

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR525WFB
Description: Part of ENCODE experiment ENCSR525WFB. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 3278.00 1.49 17.25 87.18 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 17781.00 8.10 93.59 85.07 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 151.00 0.07 0.79 100.0 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 176080.00 80.17 926.83 97.43 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 589.00 0.27 3.10 100.0 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 709.00 0.32 3.73 54.75 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 443.00 0.20 2.33 100.0 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 5436.00 97.04 28.61 100.0 RPS8-207 protein coding CDS not defined transverse colon (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 92.00 23.59 0.48 100.0 RPL7A-206 protein coding CDS not defined transverse colon (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 57.00 14.62 0.30 100.0 RPL7A-206 protein coding CDS not defined transverse colon (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 40.00 10.26 0.21 100.0 RPL7A-206 protein coding CDS not defined transverse colon (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 1177.00 0.36 6.20 100.0 RPL21-209 retained intron transverse colon (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 248.00 0.08 1.31 100.0 RPL21-209 retained intron transverse colon (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 44.00 0.01 0.23 100.0 RPL21-209 retained intron transverse colon (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 205011.00 62.63 1079.11 99.84 RPL21-209 retained intron transverse colon (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 114957.00 35.12 605.10 96.64 RPL21-209 retained intron transverse colon (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 24.00 23.08 0.13 100.0 GABRE-209 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 8625.00 21.65 45.40 83.88 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 493.00 1.24 2.59 100.0 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 22619.00 56.76 119.06 99.0 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 43.00 0.11 0.23 100.0 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 29.00 0.07 0.15 100.0 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 31.00 0.08 0.16 77.5 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 784.00 1.97 4.13 100.0 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 319.00 13.20 1.68 100.0 RPL7A-207 protein coding CDS not defined transverse colon (Tissue)