ENCFF645FQS

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR525WFB
Description: Part of ENCODE experiment ENCSR525WFB. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 11549.00 95.64 60.79 99.53 SNORD127-201 snoRNA transverse colon (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 21802.00 96.76 114.76 100.0 SNORD42B-201 snoRNA transverse colon (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 401.00 3.11 2.11 100.0 RNY4P25-201 misc RNA transverse colon (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 146.00 72.64 0.77 100.0 SNORD121A-201 snoRNA transverse colon (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 1076.00 62.23 5.66 87.13 SNORD126-201 snoRNA transverse colon (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 481.00 27.82 2.53 80.17 SNORD126-201 snoRNA transverse colon (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 3749.00 88.36 19.73 97.4 SNORD124-201 snoRNA transverse colon (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 141.00 17.58 0.74 100.0 SNHG12-201 retained intron transverse colon (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 558.00 16.82 2.94 100.0 RPL3-212 retained intron transverse colon (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 347.00 10.46 1.83 70.24 RPL3-212 retained intron transverse colon (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 4065.00 96.56 21.40 100.0 SMC1A-204 retained intron transverse colon (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 54062.00 93.30 284.57 99.11 RABGGTB-208 protein coding CDS not defined transverse colon (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 321.00 28.94 1.69 100.0 DDX39B-219 retained intron transverse colon (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 154.00 13.89 0.81 100.0 DDX39B-219 retained intron transverse colon (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 114.00 10.28 0.60 77.03 DDX39B-219 retained intron transverse colon (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 904.00 67.16 4.76 100.0 RPS8-206 protein coding CDS not defined transverse colon (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 14816.00 86.34 77.99 99.84 RPL13-207 retained intron transverse colon (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 1115.00 6.50 5.87 100.0 RPL13-207 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 589.00 0.27 3.10 100.0 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 709.00 0.32 3.73 54.75 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 443.00 0.20 2.33 100.0 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 5141.00 2.34 27.06 70.01 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 239.00 0.11 1.26 17.05 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1761.00 0.80 9.27 46.62 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 99.00 0.05 0.52 34.98 EIF4A2-219 retained intron transverse colon (Tissue)