ENCFF645FQS

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR525WFB
Description: Part of ENCODE experiment ENCSR525WFB. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 319.00 13.20 1.68 100.0 RPL7A-207 protein coding CDS not defined transverse colon (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 428.00 17.72 2.25 47.98 RPL7A-207 protein coding CDS not defined transverse colon (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 59.00 1.32 0.31 12.61 RN7SL2-201 misc RNA transverse colon (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 65.00 1.45 0.34 100.0 RN7SL2-201 misc RNA transverse colon (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 370.00 82.22 1.95 100.0 RGS11-208 retained intron transverse colon (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 1123.00 5.21 5.91 94.69 NOP56-217 protein coding CDS not defined transverse colon (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 16718.00 77.54 88.00 84.71 NOP56-217 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 573.00 0.31 3.02 100.0 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 161998.00 88.82 852.71 96.02 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 1353.00 0.74 7.12 85.63 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 324.00 0.18 1.71 46.82 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 368.00 0.20 1.94 53.18 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 2117.00 1.16 11.14 100.0 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 2283.00 1.25 12.02 100.0 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 324.00 9.80 1.71 100.0 GNL3-211 retained intron transverse colon (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 2623.00 79.34 13.81 100.0 GNL3-211 retained intron transverse colon (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 393.00 38.01 2.07 100.0 RPL5-205 retained intron transverse colon (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 92.00 8.90 0.48 100.0 RPL5-205 retained intron transverse colon (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 47.00 1.18 0.25 100.0 ZBED9-AS1-201 lncRNA transverse colon (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 1050.00 90.67 5.53 100.0 RPS3A-206 retained intron transverse colon (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 10399.00 94.45 54.74 100.0 COX7C-203 protein coding transverse colon (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 8858.92 14.75 46.63 22.12 RACK1-229 protein coding transverse colon (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 40844.56 68.02 214.99 84.06 RACK1-229 protein coding transverse colon (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 6316.00 10.52 33.25 98.2 RACK1-229 protein coding transverse colon (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 649.00 1.08 3.42 100.0 RACK1-229 protein coding transverse colon (Tissue)