ENCFF645FQS

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR525WFB
Description: Part of ENCODE experiment ENCSR525WFB. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 53.00 27.75 0.28 100.0 Y_RNA.612-201 misc RNA transverse colon (Tissue)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 423.00 0.50 2.23 100.0 SNORD71-201 snoRNA transverse colon (Tissue)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 182.00 0.22 0.96 100.0 SNORD71-201 snoRNA transverse colon (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 81589.00 97.33 429.46 99.78 SNORD71-201 snoRNA transverse colon (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 490178.00 86.78 2580.14 94.56 MIR194-2HG-201 lncRNA transverse colon (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 67912.00 12.02 357.47 40.9 MIR194-2HG-201 lncRNA transverse colon (Tissue)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 20.00 0.27 0.11 100.0 LINC01783-201 lncRNA transverse colon (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 29.00 87.88 0.15 100.0 RPS7P15-201 processed pseudogene transverse colon (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 59.00 3.46 0.31 100.0 SNORD62B-201 snoRNA transverse colon (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 130.00 7.62 0.68 100.0 SNORD62B-201 snoRNA transverse colon (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 133.00 7.80 0.70 100.0 SNORD62B-201 snoRNA transverse colon (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 541.00 31.71 2.85 79.68 SNORD62B-201 snoRNA transverse colon (Tissue)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 59.00 3.46 0.31 100.0 SNORD62B-201 snoRNA transverse colon (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 24.00 80.00 0.13 100.0 MRPL32-203 nonsense mediated decay transverse colon (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 46.00 46.46 0.24 100.0 ENST00000436739 lncRNA transverse colon (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 59.00 4.82 0.31 100.0 TMEM107-204 protein coding transverse colon (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 314.00 25.65 1.65 77.92 TMEM107-204 protein coding transverse colon (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 101.00 8.25 0.53 100.0 TMEM107-204 protein coding transverse colon (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 43.00 3.51 0.23 19.63 TMEM107-204 protein coding transverse colon (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 186.00 27.80 0.98 86.11 SNHG16-201 lncRNA transverse colon (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 100.00 14.95 0.53 100.0 SNHG16-201 lncRNA transverse colon (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 12.00 41.38 0.06 100.0 SNHG14-207 lncRNA transverse colon (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 25313.00 78.08 133.24 95.12 SNORD105B-201 snoRNA transverse colon (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 138.00 37.00 0.73 67.32 SNORD121B-201 snoRNA transverse colon (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 11549.00 95.64 60.79 99.53 SNORD127-201 snoRNA transverse colon (Tissue)