ENCFF643IED

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR737NPO
Description: Part of ENCODE experiment ENCSR737NPO. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 354.00 8.69 2.62 100.0 RPL7A-207 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 1622.00 39.83 12.00 100.0 RPL7A-207 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 469.00 86.37 3.47 100.0 RGS11-208 retained intron upper lobe of left lung (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 13357.00 79.57 98.81 94.08 NOP56-217 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 4.00 0.02 0.03 40.0 NOP56-217 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 4239.00 14.90 31.36 100.0 RABGGTB-213 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 4716.00 16.58 34.89 100.0 RABGGTB-213 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 1147.00 4.03 8.48 100.0 RABGGTB-213 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 912.00 3.21 6.75 57.79 RABGGTB-213 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 666.00 2.34 4.93 42.21 RABGGTB-213 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 5418.00 19.05 40.08 83.32 RABGGTB-213 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 3103.00 68.86 22.95 100.0 GNL3-211 retained intron upper lobe of left lung (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 971.00 21.55 7.18 100.0 GNL3-211 retained intron upper lobe of left lung (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 184.00 44.23 1.36 100.0 RPL5-205 retained intron upper lobe of left lung (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 406.00 6.80 3.00 100.0 ZBED9-AS1-201 lncRNA upper lobe of left lung (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 3085.00 91.14 22.82 100.0 RPS3A-206 retained intron upper lobe of left lung (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 11017.00 97.13 81.50 100.0 COX7C-203 protein coding upper lobe of left lung (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 5539.00 5.20 40.97 100.0 RACK1-229 protein coding upper lobe of left lung (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 18894.62 17.73 139.77 40.57 RACK1-229 protein coding upper lobe of left lung (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 40010.41 37.53 295.97 71.63 RACK1-229 protein coding upper lobe of left lung (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 34942.00 32.78 258.48 99.82 RACK1-229 protein coding upper lobe of left lung (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 123.00 3.66 0.91 96.85 RACK1-230 retained intron upper lobe of left lung (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 9.00 0.27 0.07 31.03 RACK1-230 retained intron upper lobe of left lung (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 64.00 0.82 0.47 100.0 RNA5SP486-201 rRNA pseudogene upper lobe of left lung (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 7477.00 90.18 55.31 100.0 SCARNA5-201 scaRNA upper lobe of left lung (Tissue)