ENCFF643IED

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR737NPO
Description: Part of ENCODE experiment ENCSR737NPO. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 984.00 0.22 7.28 100.0 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 7591.00 1.66 56.15 47.06 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 6809.00 1.49 50.37 70.44 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 655.00 0.14 4.85 37.05 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 1614.00 0.35 11.94 65.0 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 14545.00 3.18 107.60 85.21 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 63320.00 13.84 468.40 78.35 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 4.00 0.00 0.03 100.0 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 250440.00 54.74 1852.60 92.98 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 4156.00 0.91 30.74 34.34 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 35379.00 7.73 261.71 62.68 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 2417.00 0.53 17.88 100.0 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 3.00 1.29 0.02 100.0 RPS8-207 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 232.00 20.68 1.72 100.0 RPL7A-206 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 136.00 12.12 1.01 100.0 RPL7A-206 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 398.00 35.47 2.94 100.0 RPL7A-206 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 2.00 0.00 0.01 100.0 RPL21-209 retained intron upper lobe of left lung (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 7988.00 2.43 59.09 100.0 RPL21-209 retained intron upper lobe of left lung (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 933.00 0.28 6.90 100.0 RPL21-209 retained intron upper lobe of left lung (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 26628.00 8.09 196.98 96.7 RPL21-209 retained intron upper lobe of left lung (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 288685.00 87.70 2135.51 94.77 RPL21-209 retained intron upper lobe of left lung (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 51.00 28.49 0.38 100.0 GABRE-209 retained intron upper lobe of left lung (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 420.00 5.95 3.11 100.0 RPL13A-212 retained intron upper lobe of left lung (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 223.00 3.16 1.65 100.0 RPL13A-212 retained intron upper lobe of left lung (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 495.00 7.01 3.66 100.0 RPL13A-212 retained intron upper lobe of left lung (Tissue)