ENCFF643IED

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR737NPO
Description: Part of ENCODE experiment ENCSR737NPO. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 202.00 24.94 1.49 100.0 HCN2-201 protein coding upper lobe of left lung (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 3.00 12.50 0.02 100.0 SLC49A4-201 protein coding upper lobe of left lung (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 28.00 8.72 0.21 100.0 ATP5MC3-201 protein coding upper lobe of left lung (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 202.00 78.60 1.49 100.0 CDC25A-201 protein coding upper lobe of left lung (Tissue)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 1941.00 76.69 14.36 100.0 RUNX3-201 protein coding upper lobe of left lung (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 322.00 44.78 2.38 100.0 BLOC1S4-201 protein coding upper lobe of left lung (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 225.00 17.33 1.66 100.0 ATAD5-201 protein coding upper lobe of left lung (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 107.00 5.82 0.79 100.0 SLITRK5-201 protein coding upper lobe of left lung (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 14.00 45.16 0.10 100.0 HASPIN-201 protein coding upper lobe of left lung (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 419.00 94.58 3.10 100.0 ATG101-201 protein coding upper lobe of left lung (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 63.00 46.67 0.47 100.0 PRICKLE1-201 protein coding upper lobe of left lung (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 76.00 91.57 0.56 95.0 MIR133A2-201 miRNA upper lobe of left lung (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 3.00 16.67 0.02 100.0 PBLD-204 protein coding upper lobe of left lung (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 311650.00 82.50 2305.40 95.76 MIRLET7BHG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 33190.00 8.79 245.52 78.85 MIRLET7BHG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 1025.00 2.88 7.58 70.16 MIR375-201 miRNA upper lobe of left lung (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 34310.00 96.33 253.80 99.27 MIR375-201 miRNA upper lobe of left lung (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 2446.00 42.03 18.09 100.0 MIR30E-201 miRNA upper lobe of left lung (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 2842.00 48.83 21.02 100.0 MIR30E-201 miRNA upper lobe of left lung (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 628.00 41.62 4.65 100.0 MIR29A-201 miRNA upper lobe of left lung (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 162.00 82.23 1.20 100.0 MIR345-201 miRNA upper lobe of left lung (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 13271.00 98.35 98.17 100.0 MIR16-2-201 miRNA upper lobe of left lung (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 14.00 0.90 0.10 100.0 MIR340-201 miRNA upper lobe of left lung (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 1491.00 95.39 11.03 100.0 MIR340-201 miRNA upper lobe of left lung (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 1032.00 35.27 7.63 100.0 MIR107-201 miRNA upper lobe of left lung (Tissue)