ENCFF643IED

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR737NPO
Description: Part of ENCODE experiment ENCSR737NPO. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 1026.00 17.60 7.59 100.0 SNORD62B-201 snoRNA upper lobe of left lung (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 1698.00 29.12 12.56 83.48 SNORD62B-201 snoRNA upper lobe of left lung (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 27.00 0.46 0.20 100.0 SNORD62B-201 snoRNA upper lobe of left lung (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 70.00 90.91 0.52 100.0 MRPL32-203 nonsense mediated decay upper lobe of left lung (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 12.00 60.00 0.09 100.0 ENST00000436739 lncRNA upper lobe of left lung (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 11290.00 45.13 83.52 86.71 TMEM107-204 protein coding upper lobe of left lung (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 17.00 0.07 0.13 100.0 TMEM107-204 protein coding upper lobe of left lung (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 316.00 1.26 2.34 100.0 TMEM107-204 protein coding upper lobe of left lung (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 6507.00 26.01 48.13 94.47 TMEM107-204 protein coding upper lobe of left lung (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 1055.00 60.15 7.80 100.0 SNHG16-201 lncRNA upper lobe of left lung (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 48956.00 80.67 362.15 94.73 SNORD105B-201 snoRNA upper lobe of left lung (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 351.00 30.13 2.60 49.58 SNORD121B-201 snoRNA upper lobe of left lung (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 431.00 34.10 3.19 100.0 SNORD127-201 snoRNA upper lobe of left lung (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 15689.00 94.72 116.06 100.0 SNORD42B-201 snoRNA upper lobe of left lung (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 359.00 6.85 2.66 100.0 RNY4P25-201 misc RNA upper lobe of left lung (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 414.00 77.97 3.06 100.0 SNORD121A-201 snoRNA upper lobe of left lung (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 2537.00 94.03 18.77 100.0 SNORD126-201 snoRNA upper lobe of left lung (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 1234.00 48.99 9.13 100.0 SNHG12-201 retained intron upper lobe of left lung (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 5051.00 97.49 37.36 100.0 SMC1A-204 retained intron upper lobe of left lung (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 523.00 18.90 3.87 100.0 DDX39B-219 retained intron upper lobe of left lung (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1210.00 43.73 8.95 100.0 DDX39B-219 retained intron upper lobe of left lung (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 3947.00 87.73 29.20 100.0 RPS8-206 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 493.00 4.24 3.65 99.6 RPL13-207 retained intron upper lobe of left lung (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 7196.00 61.90 53.23 100.0 RPL13-207 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 1614.00 0.35 11.94 65.0 EIF4A2-219 retained intron upper lobe of left lung (Tissue)