ENCFF625OBY

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR880LXP
Description: Part of ENCODE experiment ENCSR880LXP. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 215.00 11.68 1.26 100.0 SNORD62B-201 snoRNA sigmoid colon (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 603.00 32.77 3.53 90.13 SNORD62B-201 snoRNA sigmoid colon (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 6.00 100.00 0.04 100.0 MRPL32-203 nonsense mediated decay sigmoid colon (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 1.00 20.00 0.01 100.0 ENST00000436739 lncRNA sigmoid colon (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 598.00 58.34 3.50 81.25 TMEM107-204 protein coding sigmoid colon (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 64.00 6.24 0.37 100.0 TMEM107-204 protein coding sigmoid colon (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 770.00 79.22 4.51 100.0 SNHG16-201 lncRNA sigmoid colon (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 46447.00 86.77 272.06 96.23 SNORD105B-201 snoRNA sigmoid colon (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 437.00 37.87 2.56 51.41 SNORD121B-201 snoRNA sigmoid colon (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 19154.00 96.06 112.19 100.0 SNORD42B-201 snoRNA sigmoid colon (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 712.00 14.40 4.17 100.0 RNY4P25-201 misc RNA sigmoid colon (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 449.00 88.91 2.63 100.0 SNORD121A-201 snoRNA sigmoid colon (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 6691.00 97.66 39.19 99.97 SNORD126-201 snoRNA sigmoid colon (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 2.00 0.03 0.01 0.28 SNORD126-201 snoRNA sigmoid colon (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 276.00 30.98 1.62 100.0 SNHG12-201 retained intron sigmoid colon (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 3924.00 95.22 22.98 100.0 SMC1A-204 retained intron sigmoid colon (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 446.00 18.18 2.61 100.0 DDX39B-219 retained intron sigmoid colon (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 7.00 0.29 0.04 100.0 DDX39B-219 retained intron sigmoid colon (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 967.00 39.42 5.66 100.0 DDX39B-219 retained intron sigmoid colon (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 1532.00 81.66 8.97 100.0 RPS8-206 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 468.00 5.71 2.74 98.94 RPL13-207 retained intron sigmoid colon (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 4787.00 58.39 28.04 100.0 RPL13-207 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 929.00 0.29 5.44 60.52 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1736.00 0.55 10.17 52.83 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 125.00 0.04 0.73 26.94 EIF4A2-219 retained intron sigmoid colon (Tissue)