ENCFF625OBY

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR880LXP
Description: Part of ENCODE experiment ENCSR880LXP. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 356.00 74.48 2.09 100.0 NDE1-202 protein coding sigmoid colon (Tissue)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 64.00 45.71 0.37 100.0 MIR887-201 miRNA sigmoid colon (Tissue)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 31.00 93.94 0.18 100.0 MIR889-201 miRNA sigmoid colon (Tissue)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 14.00 100.00 0.08 100.0 MIR548K-201 miRNA sigmoid colon (Tissue)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 1129.00 73.26 6.61 100.0 MIR320B2-201 miRNA sigmoid colon (Tissue)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 18.00 90.00 0.11 100.0 MIR1271-201 miRNA sigmoid colon (Tissue)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 547.00 0.66 3.20 100.0 SNORD100-201 snoRNA sigmoid colon (Tissue)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 2717.00 3.30 15.91 100.0 SNORD100-201 snoRNA sigmoid colon (Tissue)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 74766.00 90.89 437.93 100.0 SNORD100-201 snoRNA sigmoid colon (Tissue)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 1403.00 1.71 8.22 100.0 SNORD100-201 snoRNA sigmoid colon (Tissue)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 2534.00 72.61 14.84 100.0 SNORD111B-201 snoRNA sigmoid colon (Tissue)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 226.00 5.31 1.32 100.0 RNU2-36P-201 snRNA sigmoid colon (Tissue)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 176.00 4.13 1.03 100.0 RNU2-36P-201 snRNA sigmoid colon (Tissue)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 733.00 1.56 4.29 100.0 SNORD19C-201 snoRNA sigmoid colon (Tissue)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 45448.00 96.94 266.20 99.32 SNORD19C-201 snoRNA sigmoid colon (Tissue)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 1854.00 79.88 10.86 100.0 SNORD12B-201 snoRNA sigmoid colon (Tissue)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 33.00 1.42 0.19 100.0 SNORD12B-201 snoRNA sigmoid colon (Tissue)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 31.00 3.60 0.18 100.0 Y_RNA.609-201 misc RNA sigmoid colon (Tissue)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 77.00 24.21 0.45 100.0 Y_RNA.612-201 misc RNA sigmoid colon (Tissue)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 217.00 16.12 1.27 100.0 SNORD71-201 snoRNA sigmoid colon (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 269.00 19.99 1.58 100.0 SNORD71-201 snoRNA sigmoid colon (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 3724.00 86.60 21.81 94.57 MIR194-2HG-201 lncRNA sigmoid colon (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 510.00 11.86 2.99 46.32 MIR194-2HG-201 lncRNA sigmoid colon (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 19.00 100.00 0.11 100.0 RPS7P15-201 processed pseudogene sigmoid colon (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 243.00 13.21 1.42 100.0 SNORD62B-201 snoRNA sigmoid colon (Tissue)