ENCFF625OBY

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR880LXP
Description: Part of ENCODE experiment ENCSR880LXP. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 38.00 0.01 0.22 100.0 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 929.00 0.29 5.44 60.52 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 810.00 0.25 4.74 100.0 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 846.00 0.27 4.96 75.2 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 160.00 0.05 0.94 26.49 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 3821.00 1.20 22.38 83.37 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 46907.00 14.76 274.75 82.37 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 246301.00 77.51 1442.67 98.66 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 5070.00 1.60 29.70 67.38 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 49.00 6.73 0.29 100.0 RPL7A-206 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 291.00 39.97 1.70 100.0 RPL7A-206 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 194.00 26.65 1.14 100.0 RPL7A-206 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 20823.00 4.22 121.97 96.21 RPL21-209 retained intron sigmoid colon (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 4988.00 1.01 29.22 100.0 RPL21-209 retained intron sigmoid colon (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 680.00 0.14 3.98 100.0 RPL21-209 retained intron sigmoid colon (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 464681.00 94.13 2721.79 97.23 RPL21-209 retained intron sigmoid colon (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 6.00 18.75 0.04 100.0 GABRE-209 retained intron sigmoid colon (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 140.00 7.15 0.82 100.0 RPL13A-212 retained intron sigmoid colon (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 143.00 7.31 0.84 100.0 RPL13A-212 retained intron sigmoid colon (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 88.00 4.50 0.52 100.0 RPL13A-212 retained intron sigmoid colon (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 99.00 8.82 0.58 100.0 RPL7A-207 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 268.00 23.86 1.57 100.0 RPL7A-207 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 152.00 89.41 0.89 100.0 RGS11-208 retained intron sigmoid colon (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 6914.00 73.55 40.50 89.37 NOP56-217 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 376.00 2.88 2.20 100.0 RABGGTB-213 protein coding CDS not defined sigmoid colon (Tissue)