ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000662228.1 ENST00000662228.1_1206_1269_+ 1206–1269 284.00 31.42 5.55 100.0 MEG8-234 lncRNA GM23248 (Cell line)
ENST00000662228.1 ENST00000662228.1_1205_1272_+ 1205–1272 149.00 16.48 2.91 100.0 MEG8-234 lncRNA GM23248 (Cell line)
ENST00000663187.1 ENST00000663187.1_2_76_+ 2–76 143.00 88.82 2.79 100.0 SNHG17-252 lncRNA GM23248 (Cell line)
ENST00000663945.1 ENST00000663945.1_2_92_+ 2–92 7.00 18.42 0.14 100.0 SNHG14-288 lncRNA GM23248 (Cell line)
ENST00000665787.1 ENST00000665787.1_2059_2127_+ 2059–2127 858.00 85.46 16.77 100.0 MEG8-240 lncRNA GM23248 (Cell line)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 96.00 10.49 1.88 100.0 ENST00000666735 lncRNA GM23248 (Cell line)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 124.00 13.55 2.42 100.0 ENST00000666735 lncRNA GM23248 (Cell line)
ENST00000666972.1 ENST00000666972.1_2488_2551_+ 2488–2551 2017.00 84.57 39.42 100.0 MEG8-242 lncRNA GM23248 (Cell line)
ENST00000667788.1 ENST00000667788.1_3_90_+ 3–90 3.27 5.73 0.06 65.34 SNHG14-312 lncRNA GM23248 (Cell line)
ENST00000667788.1 ENST00000667788.1_2_92_+ 2–92 4.65 8.15 0.09 92.91 SNHG14-312 lncRNA GM23248 (Cell line)
ENST00000667788.1 ENST00000667788.1_16_92_+ 16–92 2.00 3.51 0.04 100.0 SNHG14-312 lncRNA GM23248 (Cell line)
ENST00000667814.1 ENST00000667814.1_36_68_+ 36–68 31.00 0.12 0.61 100.0 MEG8-244 lncRNA GM23248 (Cell line)
ENST00000667814.1 ENST00000667814.1_2_32_+ 2–32 62.00 0.24 1.21 100.0 MEG8-244 lncRNA GM23248 (Cell line)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 25270.00 97.74 493.86 99.26 MEG8-244 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 76.00 0.02 1.49 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 657.00 0.21 12.84 98.35 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 76.26 0.02 1.49 46.5 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 475.00 0.15 9.28 87.16 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 253599.00 79.75 4956.20 99.19 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 19.00 0.01 0.37 65.52 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 8217.00 2.58 160.59 99.59 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 316.00 0.10 6.18 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 5162.00 1.62 100.88 99.35 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 34.00 0.01 0.66 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 40.00 0.01 0.78 100.0 SNHG1-248 lncRNA GM23248 (Cell line)