ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 128.00 0.04 2.50 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 973.00 0.31 19.02 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 67.00 0.02 1.31 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 6.00 0.00 0.12 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 683.00 0.21 13.35 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 62.00 0.02 1.21 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 55.00 0.02 1.07 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 4006.00 1.26 78.29 84.62 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 3.00 0.00 0.06 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 9419.00 2.96 184.08 95.79 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 19.00 0.01 0.37 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 64.00 0.02 1.25 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 21797.00 6.85 425.99 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 264.00 0.08 5.16 75.43 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 85.84 0.03 1.68 52.34 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 10.00 0.00 0.20 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 250.00 0.08 4.89 53.76 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 58.00 0.02 1.13 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 894.00 0.28 17.47 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 1029.00 0.32 20.11 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 52.00 32.70 1.02 100.0 SNHG14-315 lncRNA GM23248 (Cell line)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 3.00 1.89 0.06 100.0 SNHG14-315 lncRNA GM23248 (Cell line)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 4.00 2.52 0.08 100.0 SNHG14-315 lncRNA GM23248 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 305.00 4.49 5.96 100.0 SNHG5-273 lncRNA GM23248 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 774.13 11.40 15.13 36.69 SNHG5-273 lncRNA GM23248 (Cell line)