ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 49.00 0.15 0.96 100.0 SNHG29-232 lncRNA GM23248 (Cell line)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 1681.00 5.13 32.85 100.0 SNHG29-232 lncRNA GM23248 (Cell line)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 644.00 1.97 12.59 100.0 SNHG29-232 lncRNA GM23248 (Cell line)
ENST00000655143.1 ENST00000655143.1_3091_3153_+ 3091–3153 1.00 0.70 0.02 100.0 SNHG14-234 lncRNA GM23248 (Cell line)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 2.00 1.41 0.04 66.67 SNHG14-234 lncRNA GM23248 (Cell line)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 3.00 2.11 0.06 100.0 SNHG14-234 lncRNA GM23248 (Cell line)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 1.00 0.70 0.02 100.0 SNHG14-234 lncRNA GM23248 (Cell line)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 244.00 19.63 4.77 87.77 ENST00000655317 lncRNA GM23248 (Cell line)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 439.00 35.32 8.58 100.0 ENST00000655317 lncRNA GM23248 (Cell line)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 60.00 4.83 1.17 19.42 ENST00000655317 lncRNA GM23248 (Cell line)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 8.00 0.64 0.16 100.0 ENST00000655317 lncRNA GM23248 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 128.00 7.56 2.50 66.67 LINC01962-202 lncRNA GM23248 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 922.00 54.43 18.02 100.0 LINC01962-202 lncRNA GM23248 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 212.00 12.51 4.14 100.0 LINC01962-202 lncRNA GM23248 (Cell line)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 3.00 1.08 0.06 100.0 SNHG14-241 lncRNA GM23248 (Cell line)
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 9141.00 98.36 178.65 100.0 MEG8-228 lncRNA GM23248 (Cell line)
ENST00000657237.1 ENST00000657237.1_1408_1496_+ 1408–1496 1.00 2.17 0.02 100.0 SNHG14-254 lncRNA GM23248 (Cell line)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 2.00 0.13 0.04 100.0 LIMD1-AS1-204 lncRNA GM23248 (Cell line)
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 429.00 28.30 8.38 88.45 LIMD1-AS1-204 lncRNA GM23248 (Cell line)
ENST00000659483.3 ENST00000659483.3_1071_1093_+ 1071–1093 2780.00 84.04 54.33 93.51 MIR99AHG-262 lncRNA GM23248 (Cell line)
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 209.00 6.32 4.08 100.0 MIR99AHG-262 lncRNA GM23248 (Cell line)
ENST00000660956.1 ENST00000660956.1_2_92_+ 2–92 1.00 100.00 0.02 100.0 SNHG14-270 lncRNA GM23248 (Cell line)
ENST00000661815.1 ENST00000661815.1_36_69_+ 36–69 110.00 22.77 2.15 100.0 MEG8-233 lncRNA GM23248 (Cell line)
ENST00000661815.1 ENST00000661815.1_2_70_+ 2–70 96.00 19.88 1.88 100.0 MEG8-233 lncRNA GM23248 (Cell line)
ENST00000661889.1 ENST00000661889.1_1145_1233_+ 1145–1233 1.00 1.61 0.02 100.0 SNHG14-278 lncRNA GM23248 (Cell line)