ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385129.3 ENST00000385129.3_19_40_+ 19–40 117.00 0.77 2.29 100.0 MIR27B-201 miRNA GM23248 (Cell line)
ENST00000385189.3 ENST00000385189.3_25_47_+ 25–47 1.00 25.00 0.02 100.0 MIR196A2-201 miRNA GM23248 (Cell line)
ENST00000385199.1 ENST00000385199.1_51_70_+ 51–70 525.00 85.23 10.26 90.05 MIR654-201 miRNA GM23248 (Cell line)
ENST00000385200.3 ENST00000385200.3_33_54_+ 33–54 1.00 100.00 0.02 100.0 MIR204-201 miRNA GM23248 (Cell line)
ENST00000385212.3 ENST00000385212.3_54_76_+ 54–76 269.00 82.52 5.26 100.0 MIR152-201 miRNA GM23248 (Cell line)
ENST00000385219.1 ENST00000385219.1_23_45_+ 23–45 2.00 66.67 0.04 100.0 MIR138-1-201 miRNA GM23248 (Cell line)
ENST00000385227.1 ENST00000385227.1_17_40_+ 17–40 60.00 81.08 1.17 100.0 MIR30C1-201 miRNA GM23248 (Cell line)
ENST00000385235.3 ENST00000385235.3_16_37_+ 16–37 8.00 72.73 0.16 100.0 MIR660-201 miRNA GM23248 (Cell line)
ENST00000385236.1 ENST00000385236.1_55_76_+ 55–76 1374.00 29.54 26.85 100.0 MIR125B1-201 miRNA GM23248 (Cell line)
ENST00000385236.1 ENST00000385236.1_15_37_+ 15–37 2777.00 59.71 54.27 93.5 MIR125B1-201 miRNA GM23248 (Cell line)
ENST00000385254.3 ENST00000385254.3_16_37_+ 16–37 59.00 50.00 1.15 100.0 MIR493-201 miRNA GM23248 (Cell line)
ENST00000385254.3 ENST00000385254.3_57_78_+ 57–78 42.00 35.59 0.82 100.0 MIR493-201 miRNA GM23248 (Cell line)
ENST00000385255.3 ENST00000385255.3_23_46_+ 23–46 3.81 76.19 0.07 76.19 MIR182-201 miRNA GM23248 (Cell line)
ENST00000385259.1 ENST00000385259.1_13_34_+ 13–34 12548.00 92.05 245.23 94.88 MIR100-201 miRNA GM23248 (Cell line)
ENST00000385261.1 ENST00000385261.1_51_73_+ 51–73 59.00 95.16 1.15 100.0 MIR301A-201 miRNA GM23248 (Cell line)
ENST00000385274.1 ENST00000385274.1_55_74_+ 55–74 154.00 45.56 3.01 78.17 MIR130A-201 miRNA GM23248 (Cell line)
ENST00000385274.1 ENST00000385274.1_55_77_+ 55–77 177.00 52.37 3.46 76.29 MIR130A-201 miRNA GM23248 (Cell line)
ENST00000385277.1 ENST00000385277.1_8_29_+ 8–29 7045.00 98.93 137.68 99.77 MIRLET7F2-201 miRNA GM23248 (Cell line)
ENST00000385278.3 ENST00000385278.3_61_82_+ 61–82 5.00 83.33 0.10 100.0 MIR652-201 miRNA GM23248 (Cell line)
ENST00000385282.3 ENST00000385282.3_63_84_+ 63–84 105.00 51.72 2.05 100.0 MIR140-201 miRNA GM23248 (Cell line)
ENST00000385301.1 ENST00000385301.1_12_32_+ 12–32 7.00 12.28 0.14 100.0 MIR106B-201 miRNA GM23248 (Cell line)
ENST00000385301.1 ENST00000385301.1_52_71_+ 52–71 12.00 21.05 0.23 50.0 MIR106B-201 miRNA GM23248 (Cell line)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 110.00 15.19 2.15 99.1 SNORD83A-201 snoRNA GM23248 (Cell line)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 393.00 54.28 7.68 100.0 SNORD83A-201 snoRNA GM23248 (Cell line)
ENST00000386967.1 ENST00000386967.1_2_70_+ 2–70 139.00 67.48 2.72 100.0 SNORD41-201 snoRNA GM23248 (Cell line)