ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387314.1 ENST00000387314.1_41_56_+ 41–56 10.00 2.35 0.20 18.87 MT-TF-201 Mt tRNA GM23248 (Cell line)
ENST00000387314.1 ENST00000387314.1_1_54_+ 1–54 2.00 0.47 0.04 100.0 MT-TF-201 Mt tRNA GM23248 (Cell line)
ENST00000387314.1 ENST00000387314.1_35_54_+ 35–54 27.00 6.35 0.53 72.97 MT-TF-201 Mt tRNA GM23248 (Cell line)
ENST00000387342.1 ENST00000387342.1_1_53_+ 1–53 75.00 16.93 1.47 100.0 MT-TV-201 Mt tRNA GM23248 (Cell line)
ENST00000387347.2 ENST00000387347.2_1500_1559_+ 1500–1559 32.00 0.94 0.63 100.0 MT-RNR2-201 Mt rRNA GM23248 (Cell line)
ENST00000387347.2 ENST00000387347.2_1297_1329_+ 1297–1329 5.00 0.15 0.10 100.0 MT-RNR2-201 Mt rRNA GM23248 (Cell line)
ENST00000387347.2 ENST00000387347.2_1500_1528_+ 1500–1528 37.00 1.09 0.72 74.0 MT-RNR2-201 Mt rRNA GM23248 (Cell line)
ENST00000387347.2 ENST00000387347.2_1500_1531_+ 1500–1531 62.00 1.82 1.21 89.86 MT-RNR2-201 Mt rRNA GM23248 (Cell line)
ENST00000387347.2 ENST00000387347.2_74_96_+ 74–96 9.00 0.26 0.18 100.0 MT-RNR2-201 Mt rRNA GM23248 (Cell line)
ENST00000387347.2 ENST00000387347.2_1132_1147_+ 1132–1147 13.00 0.38 0.25 100.0 MT-RNR2-201 Mt rRNA GM23248 (Cell line)
ENST00000387347.2 ENST00000387347.2_1357_1376_+ 1357–1376 9.00 0.26 0.18 100.0 MT-RNR2-201 Mt rRNA GM23248 (Cell line)
ENST00000387365.1 ENST00000387365.1_1_58_+ 1–58 116.00 31.18 2.27 100.0 MT-TI-201 Mt tRNA GM23248 (Cell line)
ENST00000387365.1 ENST00000387365.1_1_51_+ 1–51 84.00 22.58 1.64 93.33 MT-TI-201 Mt tRNA GM23248 (Cell line)
ENST00000387372.1 ENST00000387372.1_1_32_+ 1–32 470.24 18.30 9.19 47.98 MT-TQ-201 Mt tRNA GM23248 (Cell line)
ENST00000387372.1 ENST00000387372.1_1_55_+ 1–55 3.00 0.12 0.06 100.0 MT-TQ-201 Mt tRNA GM23248 (Cell line)
ENST00000387372.1 ENST00000387372.1_1_36_+ 1–36 924.00 35.95 18.06 92.68 MT-TQ-201 Mt tRNA GM23248 (Cell line)
ENST00000387372.1 ENST00000387372.1_1_30_+ 1–30 538.56 20.96 10.53 66.9 MT-TQ-201 Mt tRNA GM23248 (Cell line)
ENST00000387377.1 ENST00000387377.1_1_51_+ 1–51 5.00 1.79 0.10 100.0 MT-TM-201 Mt tRNA GM23248 (Cell line)
ENST00000387377.1 ENST00000387377.1_1_31_+ 1–31 138.00 49.29 2.70 90.2 MT-TM-201 Mt tRNA GM23248 (Cell line)
ENST00000387405.1 ENST00000387405.1_1_24_+ 1–24 172.00 76.44 3.36 100.0 MT-TC-201 Mt tRNA GM23248 (Cell line)
ENST00000387409.1 ENST00000387409.1_1_32_+ 1–32 576.00 23.03 11.26 90.85 MT-TY-201 Mt tRNA GM23248 (Cell line)
ENST00000387409.1 ENST00000387409.1_1_56_+ 1–56 5.00 0.20 0.10 100.0 MT-TY-201 Mt tRNA GM23248 (Cell line)
ENST00000387409.1 ENST00000387409.1_1_37_+ 1–37 165.00 6.60 3.22 78.57 MT-TY-201 Mt tRNA GM23248 (Cell line)
ENST00000387409.1 ENST00000387409.1_1_50_+ 1–50 2.00 0.08 0.04 100.0 MT-TY-201 Mt tRNA GM23248 (Cell line)
ENST00000387409.1 ENST00000387409.1_1_65_+ 1–65 1380.00 55.18 26.97 100.0 MT-TY-201 Mt tRNA GM23248 (Cell line)