ENCFF583SZV

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR573RGL
Description: Part of ENCODE experiment ENCSR573RGL. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 114.00 79.72 0.49 100.0 ENST00000578036 lncRNA stomach (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 523.00 90.48 2.25 100.0 RPL23A-207 protein coding stomach (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 289.00 88.92 1.24 100.0 MIR744-201 miRNA stomach (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 299.00 64.03 1.29 100.0 MIR378C-201 miRNA stomach (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 3.00 0.19 0.01 100.0 MIR142HG-201 lncRNA stomach (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 7.00 0.44 0.03 1.48 MIR142HG-201 lncRNA stomach (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 1261.00 80.01 5.42 84.35 MIR142HG-201 lncRNA stomach (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 635.40 0.06 2.73 53.08 RPL23A-208 retained intron stomach (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 881632.00 82.65 3792.25 90.25 RPL23A-208 retained intron stomach (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 178625.00 16.74 768.34 92.89 RPL23A-208 retained intron stomach (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 881.25 0.08 3.79 59.91 RPL23A-208 retained intron stomach (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 81.00 3.54 0.35 100.0 MIR133A1HG-202 lncRNA stomach (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 16977.00 19.72 73.02 64.84 RPL17-211 retained intron stomach (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 372.00 0.43 1.60 100.0 RPL17-211 retained intron stomach (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 4363.00 5.07 18.77 65.35 RPL17-211 retained intron stomach (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 13496.00 15.68 58.05 95.24 RPL17-211 retained intron stomach (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 47113.00 54.73 202.65 93.43 RPL17-211 retained intron stomach (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 18.00 34.62 0.08 40.91 ENST00000582320 lncRNA stomach (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 12416.65 43.38 53.41 55.86 RPL17-214 retained intron stomach (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 3118.00 10.89 13.41 100.0 RPL17-214 retained intron stomach (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 11526.51 40.27 49.58 48.18 RPL17-214 retained intron stomach (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 3.00 0.00 0.01 100.0 SNORD43-201 snoRNA stomach (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 341036.00 98.85 1466.93 99.95 SNORD43-201 snoRNA stomach (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 63.00 0.02 0.27 100.0 SNORD43-201 snoRNA stomach (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 72.00 36.55 0.31 100.0 MIR151B-201 miRNA stomach (Tissue)