ENCFF583SZV

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR573RGL
Description: Part of ENCODE experiment ENCSR573RGL. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 1135.00 1.58 4.88 100.0 SNHG14-220 retained intron stomach (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 69.00 0.10 0.30 100.0 SNHG14-220 retained intron stomach (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 68099.00 95.01 292.92 100.0 SNHG14-220 retained intron stomach (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 2040.00 98.17 8.77 100.0 TEKT4P2-201 transcribed unprocessed pseudogene stomach (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 35934.00 79.42 154.57 92.98 RPL4-202 retained intron stomach (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 1355.00 2.99 5.83 100.0 RPL4-202 retained intron stomach (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 267.00 0.59 1.15 100.0 RPL4-202 retained intron stomach (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 643.00 1.42 2.77 100.0 RPL4-202 retained intron stomach (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 42.00 0.03 0.18 100.0 ENST00000563103 lncRNA stomach (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 2608.00 37.41 11.22 100.0 RPL4-207 retained intron stomach (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 1609.00 23.08 6.92 100.0 RPL4-207 retained intron stomach (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 199759.00 86.70 859.24 94.21 ENST00000565336 lncRNA stomach (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 10834.00 4.70 46.60 76.93 ENST00000565336 lncRNA stomach (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 3751.00 19.69 16.13 100.0 RBMX-210 retained intron stomach (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 6882.00 36.12 29.60 100.0 RBMX-210 retained intron stomach (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 130.00 0.68 0.56 10.12 RBMX-210 retained intron stomach (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 195.00 17.91 0.84 100.0 RPL4-214 retained intron stomach (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 5900.04 16.71 25.38 24.73 POLG-DT-202 lncRNA stomach (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 19248.43 54.52 82.80 79.92 POLG-DT-202 lncRNA stomach (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 387.00 1.10 1.66 100.0 POLG-DT-202 lncRNA stomach (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 297.00 9.57 1.28 100.0 ENST00000570843 lncRNA stomach (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 4845.00 84.91 20.84 100.0 MIR497HG-207 lncRNA stomach (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 29525.00 96.37 127.00 97.04 MIR22HG-212 lncRNA stomach (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 396.00 40.20 1.70 48.0 SNORD53B-201 snoRNA stomach (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 429.00 43.55 1.85 52.0 SNORD53B-201 snoRNA stomach (Tissue)