ENCFF583SZV

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR573RGL
Description: Part of ENCODE experiment ENCSR573RGL. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 317.00 6.71 1.36 100.0 SNORD3A-201 snoRNA stomach (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 1837.00 36.20 7.90 100.0 NSRP1-214 protein coding stomach (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 1800.00 35.47 7.74 65.57 NSRP1-214 protein coding stomach (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 3010.00 30.88 12.95 97.35 MIR23AHG-201 lncRNA stomach (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 1146.00 11.76 4.93 82.8 MIR23AHG-201 lncRNA stomach (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 2477.00 25.41 10.65 92.63 MIR23AHG-201 lncRNA stomach (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 1591.00 16.32 6.84 85.08 MIR23AHG-201 lncRNA stomach (Tissue)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 4.00 40.00 0.02 100.0 MIR122HG-201 lncRNA stomach (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 43.00 33.08 0.18 100.0 ODAD3-204 nonsense mediated decay stomach (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 1008.00 4.94 4.34 100.0 VMP1-217 retained intron stomach (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 73.00 0.36 0.31 100.0 VMP1-217 retained intron stomach (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 10615.00 51.98 45.66 63.18 VMP1-217 retained intron stomach (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 600.00 26.39 2.58 100.0 C19orf48P-203 retained intron stomach (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 93.00 4.09 0.40 100.0 C19orf48P-203 retained intron stomach (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 5685593.00 74.33 24455.98 75.81 CARMN-209 lncRNA stomach (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 392.00 58.68 1.69 100.0 PPFIA1P1-201 processed pseudogene stomach (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 2394.00 59.70 10.30 100.0 SNORD114-21-201 snoRNA stomach (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 1173.00 29.25 5.05 100.0 SNORD114-21-201 snoRNA stomach (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 6340.00 96.50 27.27 100.0 MIR98-201 miRNA stomach (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 139.00 52.45 0.60 100.0 SNORD113-5-201 snoRNA stomach (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 127.00 90.71 0.55 100.0 MIR15A-201 miRNA stomach (Tissue)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 14.00 100.00 0.06 100.0 MIR376C-201 miRNA stomach (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 681.00 48.20 2.93 100.0 SNHG21-206 retained intron stomach (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 38647.00 48.14 166.24 97.56 MIR486-1-201 miRNA stomach (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 21857.00 61.17 94.02 99.86 NOP56-219 retained intron stomach (Tissue)