ENCFF583SZV

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR573RGL
Description: Part of ENCODE experiment ENCSR573RGL. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 160.00 2.86 0.69 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 473209.00 98.74 2035.46 99.75 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 67.00 0.07 0.29 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 85404.00 84.41 367.36 96.3 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 130.00 34.12 0.56 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-27215173 tRNA-transcript-chr6-27215173_1_19_+ 1–19 1678.00 62.52 7.22 100.0 TRNA-TRANSCRIPT-CHR6-27215173 Arg tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-27235509 tRNA-transcript-chr6-27235509_1_33_+ 1–33 233.00 12.68 1.00 100.0 TRNA-TRANSCRIPT-CHR6-27235509 Val tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-27280270 tRNA-transcript-chr6-27280270_1_33_+ 1–33 32040.00 98.02 137.82 100.0 TRNA-TRANSCRIPT-CHR6-27280270 Val tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-27290626 tRNA-transcript-chr6-27290626_1_33_+ 1–33 3170.00 98.39 13.64 100.0 TRNA-TRANSCRIPT-CHR6-27290626 Val tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_53_+ 1–53 29688.00 58.67 127.70 95.78 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_41_+ 1–41 210.00 0.42 0.90 100.0 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-27753400 tRNA-transcript-chr6-27753400_1_54_+ 1–54 61.00 0.01 0.26 100.0 TRNA-TRANSCRIPT-CHR6-27753400 Val tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-28658237 tRNA-transcript-chr6-28658237_1_22_+ 1–22 879.00 39.58 3.78 100.0 TRNA-TRANSCRIPT-CHR6-28658237 Ala tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-28951029 tRNA-transcript-chr6-28951029_13_32_+ 13–32 114.00 2.23 0.49 100.0 TRNA-TRANSCRIPT-CHR6-28951029 Lys tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_69_+ 1–69 491.00 7.17 2.11 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_42_+ 1–42 1054.00 15.40 4.53 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_18_+ 1–18 146.00 2.13 0.63 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHRX-3876801 tRNA-transcript-chrX-3876801_1_55_+ 1–55 3.00 8.57 0.01 100.0 TRNA-TRANSCRIPT-CHRX-3876801 Ile tRNA stomach (Tissue)