ENCFF583SZV

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR573RGL
Description: Part of ENCODE experiment ENCSR573RGL. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 1.00 0.01 0.00 0.02 RN7SL2-201 misc RNA stomach (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 1596.00 91.57 6.87 100.0 RGS11-208 retained intron stomach (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 8000.00 73.71 34.41 89.02 NOP56-217 protein coding CDS not defined stomach (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 6.00 0.06 0.03 24.0 NOP56-217 protein coding CDS not defined stomach (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 764.00 3.24 3.29 56.01 RABGGTB-213 protein coding CDS not defined stomach (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 2430.00 10.31 10.45 100.0 RABGGTB-213 protein coding CDS not defined stomach (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 604.00 2.56 2.60 100.0 RABGGTB-213 protein coding CDS not defined stomach (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 2986.00 12.66 12.84 100.0 RABGGTB-213 protein coding CDS not defined stomach (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 600.00 2.54 2.58 43.99 RABGGTB-213 protein coding CDS not defined stomach (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 7892.00 33.47 33.95 87.57 RABGGTB-213 protein coding CDS not defined stomach (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 3778.00 75.11 16.25 100.0 GNL3-211 retained intron stomach (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 833.00 16.56 3.58 100.0 GNL3-211 retained intron stomach (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 184.00 31.83 0.79 100.0 RPL5-205 retained intron stomach (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 123.00 2.47 0.53 100.0 ZBED9-AS1-201 lncRNA stomach (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 3972.00 89.93 17.09 100.0 RPS3A-206 retained intron stomach (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 15765.00 98.03 67.81 100.0 COX7C-203 protein coding stomach (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 8013.11 16.87 34.47 40.55 RACK1-229 protein coding stomach (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 19204.03 40.44 82.60 75.45 RACK1-229 protein coding stomach (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 12247.00 25.79 52.68 99.87 RACK1-229 protein coding stomach (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 4610.00 9.71 19.83 100.0 RACK1-229 protein coding stomach (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 106.00 5.91 0.46 100.0 RACK1-230 retained intron stomach (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 322.00 1.74 1.39 100.0 RNA5SP486-201 rRNA pseudogene stomach (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 3396.00 88.95 14.61 100.0 SCARNA5-201 scaRNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 451.00 0.11 1.94 100.0 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 303.00 0.07 1.30 43.53 RNY4-201 misc RNA stomach (Tissue)