ENCFF583SZV

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR573RGL
Description: Part of ENCODE experiment ENCSR573RGL. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 96.00 0.02 0.41 100.0 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 116917.00 26.88 502.91 78.49 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 2513.00 0.58 10.81 50.81 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 24343.00 5.60 104.71 62.12 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 1957.00 0.45 8.42 55.0 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 4364.00 1.00 18.77 85.79 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 28923.00 6.65 124.41 79.99 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 173782.00 39.96 747.51 97.92 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 13708.00 3.15 58.96 51.27 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 1163.00 0.27 5.00 100.0 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 1.00 0.31 0.00 100.0 RPS8-207 protein coding CDS not defined stomach (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 140.00 15.56 0.60 100.0 RPL7A-206 protein coding CDS not defined stomach (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 70.00 7.78 0.30 100.0 RPL7A-206 protein coding CDS not defined stomach (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 333.00 37.00 1.43 100.0 RPL7A-206 protein coding CDS not defined stomach (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 678.00 0.19 2.92 100.0 RPL21-209 retained intron stomach (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 4.00 0.00 0.02 100.0 RPL21-209 retained intron stomach (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 25207.00 6.92 108.43 95.28 RPL21-209 retained intron stomach (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 330371.00 90.72 1421.06 95.46 RPL21-209 retained intron stomach (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 4941.00 1.36 21.25 100.0 RPL21-209 retained intron stomach (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 70.00 54.69 0.30 100.0 GABRE-209 retained intron stomach (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 663.00 12.64 2.85 100.0 RPL13A-212 retained intron stomach (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 47.00 0.90 0.20 100.0 RPL13A-212 retained intron stomach (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 353.00 6.73 1.52 100.0 RPL13A-212 retained intron stomach (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 174.00 6.03 0.75 100.0 RPL7A-207 protein coding CDS not defined stomach (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 1233.00 42.75 5.30 100.0 RPL7A-207 protein coding CDS not defined stomach (Tissue)