ENCFF583SZV

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR573RGL
Description: Part of ENCODE experiment ENCSR573RGL. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 132.00 83.54 0.57 100.0 MIR454-201 miRNA stomach (Tissue)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 146.00 48.03 0.63 100.0 MIR501-201 miRNA stomach (Tissue)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 931.00 90.48 4.00 100.0 MIR769-201 miRNA stomach (Tissue)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 151.00 48.71 0.65 100.0 KRTAP19-1-201 protein coding stomach (Tissue)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 20.00 28.99 0.09 100.0 MIR708-201 miRNA stomach (Tissue)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 11.00 78.57 0.05 100.0 MIR509-3-201 miRNA stomach (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 312.00 49.45 1.34 79.39 RNU1-82P-201 snRNA stomach (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 6672.00 35.30 28.70 71.17 SNORD66-201 snoRNA stomach (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 1568.00 8.30 6.74 100.0 SNORD66-201 snoRNA stomach (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 341.00 1.80 1.47 100.0 SNORD66-201 snoRNA stomach (Tissue)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 12.00 0.06 0.05 100.0 SNORD66-201 snoRNA stomach (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 13.00 28.89 0.06 100.0 U3.17-201 snoRNA stomach (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 2867.00 89.99 12.33 100.0 SNORD17-201 snoRNA stomach (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 129.00 52.44 0.55 100.0 SNORD72-201 snoRNA stomach (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 872.00 64.88 3.75 100.0 SNORD70B-201 snoRNA stomach (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 3549.00 63.01 15.27 94.51 RNY4P18-201 misc RNA stomach (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 9381.00 11.29 40.35 100.0 SNORD69-201 snoRNA stomach (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 53330.00 64.19 229.39 100.0 SNORD69-201 snoRNA stomach (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 13087.00 15.75 56.29 100.0 SNORD69-201 snoRNA stomach (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 939.00 1.13 4.04 100.0 SNORD69-201 snoRNA stomach (Tissue)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 189.00 0.67 0.81 100.0 B4GALNT2-202 protein coding stomach (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 21922.00 78.10 94.30 91.34 B4GALNT2-202 protein coding stomach (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 600.00 88.76 2.58 100.0 NDE1-202 protein coding stomach (Tissue)
ENST00000401172.1 ENST00000401172.1_46_67_+ 46–67 4.00 100.00 0.02 100.0 MIR208B-201 miRNA stomach (Tissue)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 5.00 100.00 0.02 100.0 MIR450B-201 miRNA stomach (Tissue)