ENCFF583SZV

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR573RGL
Description: Part of ENCODE experiment ENCSR573RGL. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 76.00 29.34 0.33 100.0 MIR887-201 miRNA stomach (Tissue)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 126.00 88.11 0.54 100.0 MIR889-201 miRNA stomach (Tissue)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 24.00 100.00 0.10 100.0 MIR548K-201 miRNA stomach (Tissue)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 530.00 67.09 2.28 100.0 MIR320B2-201 miRNA stomach (Tissue)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 6.00 66.67 0.03 100.0 MIR1271-201 miRNA stomach (Tissue)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 2113.00 8.93 9.09 100.0 SNORD100-201 snoRNA stomach (Tissue)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 1118.00 4.72 4.81 100.0 SNORD100-201 snoRNA stomach (Tissue)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 18579.00 78.50 79.92 100.0 SNORD100-201 snoRNA stomach (Tissue)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 256.00 1.08 1.10 100.0 SNORD100-201 snoRNA stomach (Tissue)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 3566.00 68.87 15.34 100.0 SNORD111B-201 snoRNA stomach (Tissue)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 816.00 3.22 3.51 100.0 RNU2-36P-201 snRNA stomach (Tissue)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 593.00 2.34 2.55 100.0 RNU2-36P-201 snRNA stomach (Tissue)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 2088.00 2.99 8.98 100.0 SNORD19C-201 snoRNA stomach (Tissue)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 66049.00 94.69 284.10 99.39 SNORD19C-201 snoRNA stomach (Tissue)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 1095.00 59.16 4.71 100.0 SNORD12B-201 snoRNA stomach (Tissue)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 59.00 3.19 0.25 100.0 SNORD12B-201 snoRNA stomach (Tissue)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 26.00 5.03 0.11 100.0 Y_RNA.609-201 misc RNA stomach (Tissue)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 11.00 13.10 0.05 100.0 Y_RNA.612-201 misc RNA stomach (Tissue)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 288.00 12.18 1.24 100.0 SNORD71-201 snoRNA stomach (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 598.00 25.29 2.57 100.0 SNORD71-201 snoRNA stomach (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 151853.00 87.53 653.18 96.45 MIR194-2HG-201 lncRNA stomach (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 19760.00 11.39 85.00 45.2 MIR194-2HG-201 lncRNA stomach (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 10.00 90.91 0.04 100.0 RPS7P15-201 processed pseudogene stomach (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 554.00 15.22 2.38 100.0 SNORD62B-201 snoRNA stomach (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 549.00 15.09 2.36 100.0 SNORD62B-201 snoRNA stomach (Tissue)