ENCFF583SZV

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR573RGL
Description: Part of ENCODE experiment ENCSR573RGL. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385277.1 ENST00000385277.1_8_29_+ 8–29 261935.00 97.58 1126.69 98.17 MIRLET7F2-201 miRNA stomach (Tissue)
ENST00000385278.3 ENST00000385278.3_61_82_+ 61–82 344.00 72.27 1.48 100.0 MIR652-201 miRNA stomach (Tissue)
ENST00000385279.1 ENST00000385279.1_16_37_+ 16–37 2.00 100.00 0.01 100.0 MIR653-201 miRNA stomach (Tissue)
ENST00000385282.3 ENST00000385282.3_63_84_+ 63–84 2804.00 83.08 12.06 100.0 MIR140-201 miRNA stomach (Tissue)
ENST00000385301.1 ENST00000385301.1_52_71_+ 52–71 342.00 42.70 1.47 59.38 MIR106B-201 miRNA stomach (Tissue)
ENST00000385301.1 ENST00000385301.1_12_32_+ 12–32 10.00 1.25 0.04 100.0 MIR106B-201 miRNA stomach (Tissue)
ENST00000386967.1 ENST00000386967.1_2_70_+ 2–70 810.00 60.49 3.48 100.0 SNORD41-201 snoRNA stomach (Tissue)
ENST00000387314.1 ENST00000387314.1_41_56_+ 41–56 874.00 19.31 3.76 59.99 MT-TF-201 Mt tRNA stomach (Tissue)
ENST00000387314.1 ENST00000387314.1_1_54_+ 1–54 493.00 10.90 2.12 100.0 MT-TF-201 Mt tRNA stomach (Tissue)
ENST00000387314.1 ENST00000387314.1_35_54_+ 35–54 610.00 13.48 2.62 68.08 MT-TF-201 Mt tRNA stomach (Tissue)
ENST00000387342.1 ENST00000387342.1_1_53_+ 1–53 2234.00 36.09 9.61 100.0 MT-TV-201 Mt tRNA stomach (Tissue)
ENST00000387347.2 ENST00000387347.2_1500_1528_+ 1500–1528 2582.00 10.16 11.11 80.66 MT-RNR2-201 Mt rRNA stomach (Tissue)
ENST00000387347.2 ENST00000387347.2_1132_1147_+ 1132–1147 198.00 0.78 0.85 100.0 MT-RNR2-201 Mt rRNA stomach (Tissue)
ENST00000387347.2 ENST00000387347.2_1500_1559_+ 1500–1559 534.00 2.10 2.30 100.0 MT-RNR2-201 Mt rRNA stomach (Tissue)
ENST00000387347.2 ENST00000387347.2_1500_1531_+ 1500–1531 3861.00 15.19 16.61 91.06 MT-RNR2-201 Mt rRNA stomach (Tissue)
ENST00000387347.2 ENST00000387347.2_74_96_+ 74–96 30.00 0.12 0.13 100.0 MT-RNR2-201 Mt rRNA stomach (Tissue)
ENST00000387347.2 ENST00000387347.2_1297_1329_+ 1297–1329 81.00 0.32 0.35 100.0 MT-RNR2-201 Mt rRNA stomach (Tissue)
ENST00000387347.2 ENST00000387347.2_1357_1376_+ 1357–1376 12.00 0.05 0.05 100.0 MT-RNR2-201 Mt rRNA stomach (Tissue)
ENST00000387365.1 ENST00000387365.1_1_51_+ 1–51 573.00 29.58 2.46 97.45 MT-TI-201 Mt tRNA stomach (Tissue)
ENST00000387365.1 ENST00000387365.1_1_58_+ 1–58 228.00 11.77 0.98 100.0 MT-TI-201 Mt tRNA stomach (Tissue)
ENST00000387372.1 ENST00000387372.1_1_32_+ 1–32 25476.94 18.45 109.59 66.43 MT-TQ-201 Mt tRNA stomach (Tissue)
ENST00000387372.1 ENST00000387372.1_1_55_+ 1–55 80.00 0.06 0.34 100.0 MT-TQ-201 Mt tRNA stomach (Tissue)
ENST00000387372.1 ENST00000387372.1_1_36_+ 1–36 80554.00 58.34 346.49 91.78 MT-TQ-201 Mt tRNA stomach (Tissue)
ENST00000387372.1 ENST00000387372.1_1_30_+ 1–30 9455.09 6.85 40.67 54.96 MT-TQ-201 Mt tRNA stomach (Tissue)
ENST00000387377.1 ENST00000387377.1_1_31_+ 1–31 1531.00 19.94 6.59 50.41 MT-TM-201 Mt tRNA stomach (Tissue)