ENCFF574WUG

Library Details

Organism: Homo Sapiens
Biosample: right lobe of liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR634VLA
Description: Part of ENCODE experiment ENCSR634VLA. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's right lobe of liver tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 109.00 35.97 0.91 100.0 FMN2-209 protein coding CDS not defined right lobe of liver (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 736.00 3.84 6.14 100.0 LINC02739-203 lncRNA right lobe of liver (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 312.00 1.63 2.60 25.53 LINC02739-203 lncRNA right lobe of liver (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 801.00 4.18 6.68 100.0 LINC02739-203 lncRNA right lobe of liver (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 2071.00 10.81 17.27 100.0 LINC02739-203 lncRNA right lobe of liver (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 302.00 1.58 2.52 100.0 LINC02739-203 lncRNA right lobe of liver (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 910.00 4.75 7.59 74.47 LINC02739-203 lncRNA right lobe of liver (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 611.00 23.01 5.10 100.0 SNHG10-212 lncRNA right lobe of liver (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 1053.00 72.62 8.78 100.0 MIR222HG-206 lncRNA right lobe of liver (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 201.00 13.86 1.68 78.82 MIR222HG-206 lncRNA right lobe of liver (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 22.00 1.52 0.18 100.0 MIR222HG-206 lncRNA right lobe of liver (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 96.00 22.91 0.80 100.0 RPSA-216 retained intron right lobe of liver (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 1196.00 5.65 9.98 88.92 MIR99AHG-370 lncRNA right lobe of liver (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 18906.00 89.31 157.69 97.29 MIR99AHG-370 lncRNA right lobe of liver (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 1146.00 95.26 9.56 100.0 HPS4-237 retained intron right lobe of liver (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 113.00 94.96 0.94 100.0 MEG8-253 lncRNA right lobe of liver (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 1.00 0.61 0.01 100.0 MEG9-206 lncRNA right lobe of liver (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 50.00 30.30 0.42 100.0 MEG9-206 lncRNA right lobe of liver (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 424.00 10.21 3.54 100.0 DNAJC5-203 nonsense mediated decay right lobe of liver (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 2518.00 14.15 21.00 100.0 ENST00000707189 TEC right lobe of liver (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 20582.09 31.12 171.67 35.33 MIR17HG-214 lncRNA right lobe of liver (Tissue)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 5.00 0.01 0.04 100.0 MIR17HG-214 lncRNA right lobe of liver (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 79.00 0.12 0.66 100.0 MIR17HG-214 lncRNA right lobe of liver (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 41756.17 63.13 348.28 67.93 MIR17HG-214 lncRNA right lobe of liver (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 605.00 0.91 5.05 100.0 MIR17HG-214 lncRNA right lobe of liver (Tissue)