ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 27.00 9.75 0.32 100.0 ENST00000722183 lncRNA HT-29 (Cell line)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 5.00 62.50 0.06 100.0 THBS3-AS1-228 lncRNA HT-29 (Cell line)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 313.00 56.81 3.75 100.0 MIR200CHG-202 lncRNA HT-29 (Cell line)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 93.00 16.88 1.12 100.0 MIR200CHG-202 lncRNA HT-29 (Cell line)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 47.00 18.01 0.56 100.0 SNHG16-266 lncRNA HT-29 (Cell line)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 18.00 6.90 0.22 100.0 SNHG16-266 lncRNA HT-29 (Cell line)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 10.00 3.83 0.12 100.0 SNHG16-266 lncRNA HT-29 (Cell line)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 5.00 1.92 0.06 100.0 SNHG16-266 lncRNA HT-29 (Cell line)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 40.00 42.11 0.48 100.0 NR2F2-AS1-327 lncRNA HT-29 (Cell line)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 57.00 7.56 0.68 44.88 ENST00000747675 lncRNA HT-29 (Cell line)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 197.00 26.13 2.36 100.0 ENST00000747675 lncRNA HT-29 (Cell line)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 43.00 5.70 0.52 43.0 ENST00000747675 lncRNA HT-29 (Cell line)
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 27.00 3.58 0.32 32.14 ENST00000747675 lncRNA HT-29 (Cell line)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 225.00 29.84 2.70 100.0 ENST00000747675 lncRNA HT-29 (Cell line)
ENST00000748458.1 ENST00000748458.1_161_188_+ 161–188 13.00 18.84 0.16 81.25 SNHG26-250 lncRNA HT-29 (Cell line)
ENST00000748458.1 ENST00000748458.1_161_230_+ 161–230 16.00 23.19 0.19 45.71 SNHG26-250 lncRNA HT-29 (Cell line)
ENST00000752259.1 ENST00000752259.1_405_425_+ 405–425 20.00 10.99 0.24 100.0 LINC02422-207 lncRNA HT-29 (Cell line)
ENST00000753088.1 ENST00000753088.1_508_523_+ 508–523 18.00 7.50 0.22 100.0 ENST00000753088 lncRNA HT-29 (Cell line)
ENST00000753088.1 ENST00000753088.1_508_542_+ 508–542 8.00 3.33 0.10 100.0 ENST00000753088 lncRNA HT-29 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_127_+ 98–127 46.72 3.12 0.56 59.13 ENST00000756336 lncRNA HT-29 (Cell line)
ENST00000756336.1 ENST00000756336.1_133_172_+ 133–172 50.00 3.34 0.60 100.0 ENST00000756336 lncRNA HT-29 (Cell line)
ENST00000756336.1 ENST00000756336.1_117_172_+ 117–172 66.00 4.41 0.79 100.0 ENST00000756336 lncRNA HT-29 (Cell line)
ENST00000756336.1 ENST00000756336.1_137_172_+ 137–172 12.00 0.80 0.14 100.0 ENST00000756336 lncRNA HT-29 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_132_+ 98–132 97.33 6.50 1.17 21.58 ENST00000756336 lncRNA HT-29 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_130_+ 98–130 380.67 25.41 4.57 83.12 ENST00000756336 lncRNA HT-29 (Cell line)