ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000756336.1 ENST00000756336.1_107_172_+ 107–172 36.46 2.43 0.44 23.37 ENST00000756336 lncRNA HT-29 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_125_+ 98–125 21.40 1.43 0.26 38.21 ENST00000756336 lncRNA HT-29 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_172_+ 98–172 117.00 7.81 1.40 100.0 ENST00000756336 lncRNA HT-29 (Cell line)
ENST00000756336.1 ENST00000756336.1_109_172_+ 109–172 172.96 11.55 2.07 82.76 ENST00000756336 lncRNA HT-29 (Cell line)
ENST00000756452.1 ENST00000756452.1_116_129_+ 116–129 146.00 93.59 1.75 100.0 ENST00000756452 lncRNA HT-29 (Cell line)
ENST00000760093.1 ENST00000760093.1_80_108_+ 80–108 13.00 6.37 0.16 100.0 ENST00000760093 lncRNA HT-29 (Cell line)
ENST00000760093.1 ENST00000760093.1_77_108_+ 77–108 2.00 0.98 0.02 100.0 ENST00000760093 lncRNA HT-29 (Cell line)
ENST00000762395.1 ENST00000762395.1_325_354_+ 325–354 664.00 21.05 7.97 90.09 LINC02806-241 lncRNA HT-29 (Cell line)
ENST00000762395.1 ENST00000762395.1_325_377_+ 325–377 152.00 4.82 1.82 100.0 LINC02806-241 lncRNA HT-29 (Cell line)
ENST00000762395.1 ENST00000762395.1_324_357_+ 324–357 1266.00 40.14 15.19 85.25 LINC02806-241 lncRNA HT-29 (Cell line)
ENST00000766977.1 ENST00000766977.1_604_615_+ 604–615 54.00 57.45 0.65 100.0 EHBP1-AS1-210 lncRNA HT-29 (Cell line)
ENST00000770398.1 ENST00000770398.1_425_437_+ 425–437 2.00 1.80 0.02 100.0 ENST00000770398 lncRNA HT-29 (Cell line)
ENST00000770398.1 ENST00000770398.1_481_509_+ 481–509 47.00 42.34 0.56 100.0 ENST00000770398 lncRNA HT-29 (Cell line)
ENST00000770398.1 ENST00000770398.1_425_456_+ 425–456 3.00 2.70 0.04 100.0 ENST00000770398 lncRNA HT-29 (Cell line)
ENST00000771298.1 ENST00000771298.1_1591_1611_+ 1591–1611 21.00 1.87 0.25 100.0 ENST00000771298 lncRNA HT-29 (Cell line)
ENST00000771298.1 ENST00000771298.1_1591_1621_+ 1591–1621 813.00 72.40 9.75 91.55 ENST00000771298 lncRNA HT-29 (Cell line)
ENST00000771298.1 ENST00000771298.1_485_522_+ 485–522 3.00 0.27 0.04 100.0 ENST00000771298 lncRNA HT-29 (Cell line)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 176.00 40.09 2.11 100.0 ENST00000772672 lncRNA HT-29 (Cell line)
ENST00000772672.1 ENST00000772672.1_91_113_+ 91–113 8.00 1.82 0.10 100.0 ENST00000772672 lncRNA HT-29 (Cell line)
ENST00000773843.1 ENST00000773843.1_422_435_+ 422–435 9.00 34.62 0.11 100.0 ENST00000773843 lncRNA HT-29 (Cell line)
ENST00000775062.1 ENST00000775062.1_1327_1402_+ 1327–1402 168.00 0.11 2.02 100.0 SNHG12-223 lncRNA HT-29 (Cell line)
ENST00000775062.1 ENST00000775062.1_1328_1392_+ 1328–1392 32386.00 21.12 388.52 76.72 SNHG12-223 lncRNA HT-29 (Cell line)
ENST00000775062.1 ENST00000775062.1_1328_1395_+ 1328–1395 120194.00 78.38 1441.90 98.8 SNHG12-223 lncRNA HT-29 (Cell line)
ENST00000776279.1 ENST00000776279.1_205_232_+ 205–232 15.00 0.00 0.18 100.0 SNHG25-206 lncRNA HT-29 (Cell line)
ENST00000776279.1 ENST00000776279.1_161_234_+ 161–234 589016.00 93.01 7066.08 93.46 SNHG25-206 lncRNA HT-29 (Cell line)