ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 7.00 50.00 0.08 87.5 MIR99AHG-370 lncRNA HT-29 (Cell line)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 347.00 99.14 4.16 100.0 HPS4-237 retained intron HT-29 (Cell line)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 410.00 12.99 4.92 100.0 DNAJC5-203 nonsense mediated decay HT-29 (Cell line)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 31.00 10.26 0.37 100.0 ENST00000707189 TEC HT-29 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 1920.98 25.87 23.04 32.55 MIR17HG-214 lncRNA HT-29 (Cell line)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 59.00 0.79 0.71 100.0 MIR17HG-214 lncRNA HT-29 (Cell line)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 76.00 1.02 0.91 100.0 MIR17HG-214 lncRNA HT-29 (Cell line)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 83.00 1.12 1.00 100.0 MIR17HG-214 lncRNA HT-29 (Cell line)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 170.00 2.29 2.04 100.0 MIR17HG-214 lncRNA HT-29 (Cell line)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 656.00 8.84 7.87 100.0 MIR17HG-214 lncRNA HT-29 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 4096.17 55.17 49.14 69.01 MIR17HG-214 lncRNA HT-29 (Cell line)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 12.00 0.16 0.14 100.0 MIR17HG-214 lncRNA HT-29 (Cell line)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 31.00 0.42 0.37 100.0 MIR17HG-214 lncRNA HT-29 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 385.00 0.99 4.62 100.0 SNHG32-223 lncRNA HT-29 (Cell line)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 19.00 0.05 0.23 100.0 SNHG32-223 lncRNA HT-29 (Cell line)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 15.00 0.04 0.18 100.0 SNHG32-223 lncRNA HT-29 (Cell line)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 2079.00 5.32 24.94 94.76 SNHG32-223 lncRNA HT-29 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 36207.00 92.67 434.35 100.0 SNHG32-223 lncRNA HT-29 (Cell line)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 12270.00 94.28 147.20 96.58 SNHG32-227 lncRNA HT-29 (Cell line)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 24.00 0.18 0.29 100.0 SNHG32-227 lncRNA HT-29 (Cell line)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 18.00 0.14 0.22 100.0 SNHG32-227 lncRNA HT-29 (Cell line)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 25.00 0.19 0.30 100.0 SNHG32-227 lncRNA HT-29 (Cell line)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 83.00 83.00 1.00 100.0 B4GALT1-203 nonsense mediated decay HT-29 (Cell line)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 10.00 3.61 0.12 100.0 ENST00000722183 lncRNA HT-29 (Cell line)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 56.00 20.22 0.67 70.0 ENST00000722183 lncRNA HT-29 (Cell line)