ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 754.00 97.92 9.05 100.0 MIR98-201 miRNA HT-29 (Cell line)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 28.00 100.00 0.34 100.0 MIR15A-201 miRNA HT-29 (Cell line)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 10.00 33.33 0.12 100.0 SNHG21-206 retained intron HT-29 (Cell line)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 29.00 56.86 0.35 100.0 SNORD11B-201 snoRNA HT-29 (Cell line)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 1272.00 88.70 15.26 100.0 SNORD91B-201 snoRNA HT-29 (Cell line)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 2335.00 80.96 28.01 88.85 SNORD91A-201 snoRNA HT-29 (Cell line)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 10.00 41.67 0.12 100.0 MIR486-1-201 miRNA HT-29 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 3138.00 14.16 37.64 33.06 NOP56-219 retained intron HT-29 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 309.00 1.39 3.71 100.0 NOP56-219 retained intron HT-29 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 105.00 0.47 1.26 100.0 NOP56-219 retained intron HT-29 (Cell line)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 9426.00 42.53 113.08 98.26 NOP56-219 retained intron HT-29 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 2614.00 20.09 31.36 69.63 RNA5-8SN2-201 rRNA HT-29 (Cell line)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 67.31 0.52 0.81 60.1 RNA5-8SN2-201 rRNA HT-29 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 63.00 0.48 0.76 100.0 RNA5-8SN2-201 rRNA HT-29 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 100.00 0.77 1.20 100.0 RNA5-8SN2-201 rRNA HT-29 (Cell line)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 78.00 0.60 0.94 100.0 RNA5-8SN2-201 rRNA HT-29 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 1543.00 11.86 18.51 37.12 RNA5-8SN2-201 rRNA HT-29 (Cell line)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 53.25 0.41 0.64 47.55 RNA5-8SN2-201 rRNA HT-29 (Cell line)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 37.00 90.24 0.44 100.0 MIR7974-201 miRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 209.00 0.06 2.51 100.0 U2.3-201 snRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 541.42 0.15 6.50 30.87 U2.3-201 snRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 338161.00 91.33 4056.72 99.34 U2.3-201 snRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 2.00 0.00 0.02 100.0 U2.3-201 snRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 6659.00 1.80 79.88 80.54 U2.3-201 snRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 1570.00 0.42 18.83 52.68 U2.3-201 snRNA HT-29 (Cell line)