ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 961.00 0.26 11.53 79.09 U2.3-201 snRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 1247.18 0.34 14.96 71.1 U2.3-201 snRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 47.00 0.01 0.56 100.0 U2.3-201 snRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 4.00 0.00 0.05 100.0 U2.3-201 snRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_75_+ 1–75 40.00 0.01 0.48 100.0 U2.3-201 snRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_22_116_+ 22–116 472.00 0.13 5.66 100.0 U2.3-201 snRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 5032.01 1.36 60.37 45.39 U2.3-201 snRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 7263.70 1.96 87.14 55.44 U2.3-201 snRNA HT-29 (Cell line)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 85.00 0.02 1.02 100.0 U2.6-201 snRNA HT-29 (Cell line)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 23.00 0.91 0.28 56.1 ENST00000619323 lncRNA HT-29 (Cell line)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 2452.00 97.38 29.42 98.99 ENST00000619323 lncRNA HT-29 (Cell line)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 15.00 12.82 0.18 100.0 SCARNA4-202 scaRNA HT-29 (Cell line)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 182.00 71.37 2.18 100.0 ENST00000625572 miRNA HT-29 (Cell line)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 1061.00 86.54 12.73 100.0 ENST00000628177 snoRNA HT-29 (Cell line)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 9255.00 96.97 111.03 100.0 ENST00000630615 snoRNA HT-29 (Cell line)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 26.00 50.98 0.31 100.0 DMRT2-209 protein coding HT-29 (Cell line)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 10.00 7.30 0.12 100.0 SNORD98-201 snoRNA HT-29 (Cell line)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 68.00 49.64 0.82 100.0 SNORD98-201 snoRNA HT-29 (Cell line)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 1767.03 29.21 21.20 31.18 MIR106AHG-201 lncRNA HT-29 (Cell line)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 2.00 0.03 0.02 100.0 MIR106AHG-201 lncRNA HT-29 (Cell line)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 512.48 20.62 6.15 62.04 5S_rRNA.20-201 rRNA pseudogene HT-29 (Cell line)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 635.00 26.28 7.62 100.0 HSPA9-211 retained intron HT-29 (Cell line)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 1079.00 44.66 12.94 88.15 HSPA9-211 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 19.00 0.01 0.23 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 1062.00 0.34 12.74 100.0 GAS5-230 retained intron HT-29 (Cell line)