ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 23.00 85.19 0.28 100.0 MIR151B-201 miRNA HT-29 (Cell line)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 39.00 1.22 0.47 100.0 SNORD3A-201 snoRNA HT-29 (Cell line)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 1639.00 87.74 19.66 100.0 SNORD92-201 snoRNA HT-29 (Cell line)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 298.00 53.60 3.57 100.0 NSRP1-214 protein coding HT-29 (Cell line)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 175.00 31.47 2.10 89.74 NSRP1-214 protein coding HT-29 (Cell line)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 1009.00 64.14 12.10 100.0 MIR23AHG-201 lncRNA HT-29 (Cell line)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 67.00 4.26 0.80 88.16 MIR23AHG-201 lncRNA HT-29 (Cell line)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 122.00 7.76 1.46 93.85 MIR23AHG-201 lncRNA HT-29 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 40.00 2.54 0.48 88.89 MIR23AHG-201 lncRNA HT-29 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 10.00 0.64 0.12 50.0 MIR23AHG-201 lncRNA HT-29 (Cell line)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 2.00 50.00 0.02 100.0 ODAD3-204 nonsense mediated decay HT-29 (Cell line)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 315.00 5.02 3.78 100.0 VMP1-217 retained intron HT-29 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 186.00 2.97 2.23 100.0 VMP1-217 retained intron HT-29 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 4438.00 70.77 53.24 80.22 VMP1-217 retained intron HT-29 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 238.00 0.03 2.86 100.0 C19orf48P-203 retained intron HT-29 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 382414.29 48.48 4587.60 52.96 C19orf48P-203 retained intron HT-29 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 422332.13 53.54 5066.47 54.55 C19orf48P-203 retained intron HT-29 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 9320.00 1.18 111.81 89.97 C19orf48P-203 retained intron HT-29 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 315.00 0.04 3.78 100.0 C19orf48P-203 retained intron HT-29 (Cell line)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 2.00 0.00 0.02 100.0 C19orf48P-203 retained intron HT-29 (Cell line)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 100.00 19.61 1.20 100.0 RPS11-206 retained intron HT-29 (Cell line)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 342.00 67.06 4.10 100.0 RPS11-206 retained intron HT-29 (Cell line)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 2.00 50.00 0.02 100.0 CARMN-209 lncRNA HT-29 (Cell line)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 169.00 48.15 2.03 100.0 ENST00000602478 lncRNA HT-29 (Cell line)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 1.00 5.56 0.01 100.0 PPFIA1P1-201 processed pseudogene HT-29 (Cell line)