ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 152.00 16.59 1.82 100.0 ENST00000554988 lncRNA HT-29 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 380.00 41.48 4.56 100.0 ENST00000554988 lncRNA HT-29 (Cell line)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 83.00 100.00 1.00 100.0 TEKT4P2-201 transcribed unprocessed pseudogene HT-29 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 38451.00 92.84 461.27 97.89 RPL4-202 retained intron HT-29 (Cell line)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 289.00 0.70 3.47 100.0 RPL4-202 retained intron HT-29 (Cell line)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 16.00 0.04 0.19 100.0 RPL4-202 retained intron HT-29 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 8.00 0.02 0.10 100.0 RPL4-202 retained intron HT-29 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 251.00 0.61 3.01 100.0 RPL4-202 retained intron HT-29 (Cell line)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 12.00 0.38 0.14 100.0 ENST00000563103 lncRNA HT-29 (Cell line)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 7768.00 90.94 93.19 100.0 RPL4-207 retained intron HT-29 (Cell line)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 39.00 0.46 0.47 100.0 RPL4-207 retained intron HT-29 (Cell line)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 506.00 35.86 6.07 90.68 ENST00000565336 lncRNA HT-29 (Cell line)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 449.00 31.82 5.39 85.2 ENST00000565336 lncRNA HT-29 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 45.00 0.11 0.54 100.0 RBMX-210 retained intron HT-29 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 64.00 0.16 0.77 100.0 RBMX-210 retained intron HT-29 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 366.00 0.93 4.39 100.0 RBMX-210 retained intron HT-29 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 37249.00 94.51 446.85 98.63 RBMX-210 retained intron HT-29 (Cell line)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 927.00 62.26 11.12 100.0 RPL4-214 retained intron HT-29 (Cell line)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 181.00 12.16 2.17 100.0 RPL4-214 retained intron HT-29 (Cell line)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 292.08 27.82 3.50 46.73 POLG-DT-202 lncRNA HT-29 (Cell line)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 451.25 42.98 5.41 76.87 POLG-DT-202 lncRNA HT-29 (Cell line)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 39.00 3.71 0.47 100.0 POLG-DT-202 lncRNA HT-29 (Cell line)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 1.00 0.35 0.01 100.0 ENST00000570843 lncRNA HT-29 (Cell line)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 128.00 44.44 1.54 100.0 ENST00000570843 lncRNA HT-29 (Cell line)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 2301.00 99.27 27.60 99.61 MIR22HG-212 lncRNA HT-29 (Cell line)