ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387421.1 ENST00000387421.1_1_28_+ 1–28 13.00 0.96 0.16 100.0 MT-TK-201 Mt tRNA HT-29 (Cell line)
ENST00000387421.1 ENST00000387421.1_1_31_+ 1–31 1.00 0.07 0.01 100.0 MT-TK-201 Mt tRNA HT-29 (Cell line)
ENST00000387421.1 ENST00000387421.1_1_58_+ 1–58 467.00 34.54 5.60 100.0 MT-TK-201 Mt tRNA HT-29 (Cell line)
ENST00000387449.1 ENST00000387449.1_1_53_+ 1–53 5.00 2.75 0.06 100.0 MT-TS2-201 Mt tRNA HT-29 (Cell line)
ENST00000387449.1 ENST00000387449.1_1_26_+ 1–26 23.00 12.64 0.28 100.0 MT-TS2-201 Mt tRNA HT-29 (Cell line)
ENST00000387449.1 ENST00000387449.1_1_20_+ 1–20 18.00 9.89 0.22 85.71 MT-TS2-201 Mt tRNA HT-29 (Cell line)
ENST00000387456.1 ENST00000387456.1_1_31_+ 1–31 11.00 6.21 0.13 100.0 MT-TL2-201 Mt tRNA HT-29 (Cell line)
ENST00000387459.1 ENST00000387459.1_39_69_+ 39–69 41.00 0.03 0.49 56.16 MT-TE-201 Mt tRNA HT-29 (Cell line)
ENST00000387459.1 ENST00000387459.1_1_62_+ 1–62 101.00 0.08 1.21 72.66 MT-TE-201 Mt tRNA HT-29 (Cell line)
ENST00000387459.1 ENST00000387459.1_40_67_+ 40–67 42.00 0.04 0.50 50.6 MT-TE-201 Mt tRNA HT-29 (Cell line)
ENST00000387459.1 ENST00000387459.1_24_69_+ 24–69 32.00 0.03 0.38 100.0 MT-TE-201 Mt tRNA HT-29 (Cell line)
ENST00000387459.1 ENST00000387459.1_1_57_+ 1–57 60.00 0.05 0.72 100.0 MT-TE-201 Mt tRNA HT-29 (Cell line)
ENST00000387459.1 ENST00000387459.1_13_67_+ 13–67 163.00 0.14 1.96 100.0 MT-TE-201 Mt tRNA HT-29 (Cell line)
ENST00000387459.1 ENST00000387459.1_1_69_+ 1–69 107549.00 90.41 1290.20 94.5 MT-TE-201 Mt tRNA HT-29 (Cell line)
ENST00000388006.1 ENST00000388006.1_7_28_+ 7–28 98.00 55.68 1.18 100.0 MIR196A1-201 miRNA HT-29 (Cell line)
ENST00000389680.2 ENST00000389680.2_2_90_+ 2–90 139.00 5.90 1.67 100.0 MT-RNR1-201 Mt rRNA HT-29 (Cell line)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 77.00 3.27 0.92 100.0 MT-RNR1-201 Mt rRNA HT-29 (Cell line)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 27.00 48.21 0.32 100.0 MIR454-201 miRNA HT-29 (Cell line)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 5.00 41.67 0.06 100.0 MIR501-201 miRNA HT-29 (Cell line)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 268.00 87.87 3.22 100.0 MIR769-201 miRNA HT-29 (Cell line)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 22.00 78.57 0.26 100.0 KRTAP19-1-201 protein coding HT-29 (Cell line)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 66.00 95.65 0.79 100.0 MIR301B-201 miRNA HT-29 (Cell line)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 40.00 54.79 0.48 81.63 RNU1-82P-201 snRNA HT-29 (Cell line)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 105.00 27.56 1.26 100.0 SNORD66-201 snoRNA HT-29 (Cell line)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 24.00 6.30 0.29 47.06 SNORD66-201 snoRNA HT-29 (Cell line)