ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 65.00 17.06 0.78 100.0 SNORD66-201 snoRNA HT-29 (Cell line)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 15.00 3.94 0.18 100.0 SNORD66-201 snoRNA HT-29 (Cell line)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 27.00 75.00 0.32 100.0 U3.17-201 snoRNA HT-29 (Cell line)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 76.00 35.51 0.91 100.0 SNORD17-201 snoRNA HT-29 (Cell line)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 347.00 47.47 4.16 100.0 SNORD72-201 snoRNA HT-29 (Cell line)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 684.00 77.55 8.21 100.0 SNORD70B-201 snoRNA HT-29 (Cell line)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 44.00 44.44 0.53 93.62 RNY4P18-201 misc RNA HT-29 (Cell line)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 1109.00 52.02 13.30 100.0 SNORD90-201 snoRNA HT-29 (Cell line)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 803.00 37.66 9.63 71.95 SNORD90-201 snoRNA HT-29 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 25.00 0.18 0.30 100.0 SNORD69-201 snoRNA HT-29 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 32.00 0.23 0.38 100.0 SNORD69-201 snoRNA HT-29 (Cell line)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 8.00 0.06 0.10 100.0 SNORD69-201 snoRNA HT-29 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 13769.00 97.67 165.18 100.0 SNORD69-201 snoRNA HT-29 (Cell line)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 1037.00 61.98 12.44 87.36 SNORD70-201 snoRNA HT-29 (Cell line)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 2871.00 80.92 34.44 88.89 B4GALNT2-202 protein coding HT-29 (Cell line)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 115.00 3.24 1.38 100.0 B4GALNT2-202 protein coding HT-29 (Cell line)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 23.00 85.19 0.28 100.0 NDE1-202 protein coding HT-29 (Cell line)
ENST00000401172.1 ENST00000401172.1_46_67_+ 46–67 1.00 100.00 0.01 100.0 MIR208B-201 miRNA HT-29 (Cell line)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 5969.00 86.52 71.61 100.0 SNORD111-201 snoRNA HT-29 (Cell line)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 1687.00 45.69 20.24 67.7 SNORD88A-201 snoRNA HT-29 (Cell line)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 59.00 98.33 0.71 100.0 MIR548K-201 miRNA HT-29 (Cell line)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 9.00 75.00 0.11 100.0 MIR320B2-201 miRNA HT-29 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 20056.00 98.02 240.60 100.0 SNORD100-201 snoRNA HT-29 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 75.00 0.37 0.90 100.0 SNORD100-201 snoRNA HT-29 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 19.00 0.09 0.23 100.0 SNORD100-201 snoRNA HT-29 (Cell line)