ENCFF540WGH
Library Details
| Organism: | Homo Sapiens |
|---|---|
| Biosample: | HT-29 (Cell line) |
| GEO DB ID: | Not available |
| ENCODE Experiment ID: | ENCSR807KQN |
| Description: | Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning. |
|---|---|
| Author: | Thomas Gingeras, CSHL |
sncRNAs in this Library
| Precursor Transcript ID | sncRNA Name | sncRNA position in precursor | Expression | Expression Fraction | Expression (CPM) | Prominence | Transcript Name | Transcript Type | Biosample |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000387314.1 | ENST00000387314.1_1_54_+ | 1–54 | 4.00 | 3.81 | 0.05 | 100.0 | MT-TF-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387314.1 | ENST00000387314.1_35_54_+ | 35–54 | 2.00 | 1.90 | 0.02 | 100.0 | MT-TF-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387342.1 | ENST00000387342.1_1_53_+ | 1–53 | 126.00 | 16.07 | 1.51 | 100.0 | MT-TV-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387347.2 | ENST00000387347.2_1500_1559_+ | 1500–1559 | 29.00 | 0.63 | 0.35 | 100.0 | MT-RNR2-201 | Mt rRNA | HT-29 (Cell line) |
| ENST00000387347.2 | ENST00000387347.2_1357_1376_+ | 1357–1376 | 55.00 | 1.20 | 0.66 | 100.0 | MT-RNR2-201 | Mt rRNA | HT-29 (Cell line) |
| ENST00000387347.2 | ENST00000387347.2_1297_1329_+ | 1297–1329 | 7.00 | 0.15 | 0.08 | 100.0 | MT-RNR2-201 | Mt rRNA | HT-29 (Cell line) |
| ENST00000387347.2 | ENST00000387347.2_1500_1531_+ | 1500–1531 | 53.00 | 1.16 | 0.64 | 89.83 | MT-RNR2-201 | Mt rRNA | HT-29 (Cell line) |
| ENST00000387347.2 | ENST00000387347.2_1132_1147_+ | 1132–1147 | 75.00 | 1.64 | 0.90 | 100.0 | MT-RNR2-201 | Mt rRNA | HT-29 (Cell line) |
| ENST00000387347.2 | ENST00000387347.2_1500_1528_+ | 1500–1528 | 36.00 | 0.79 | 0.43 | 85.71 | MT-RNR2-201 | Mt rRNA | HT-29 (Cell line) |
| ENST00000387365.1 | ENST00000387365.1_1_51_+ | 1–51 | 136.00 | 13.82 | 1.63 | 90.67 | MT-TI-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387365.1 | ENST00000387365.1_1_58_+ | 1–58 | 190.00 | 19.31 | 2.28 | 100.0 | MT-TI-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387372.1 | ENST00000387372.1_1_30_+ | 1–30 | 190.17 | 15.41 | 2.28 | 66.96 | MT-TQ-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387372.1 | ENST00000387372.1_1_36_+ | 1–36 | 261.00 | 21.15 | 3.13 | 81.82 | MT-TQ-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387372.1 | ENST00000387372.1_1_32_+ | 1–32 | 236.05 | 19.13 | 2.83 | 54.77 | MT-TQ-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387372.1 | ENST00000387372.1_1_55_+ | 1–55 | 12.00 | 0.97 | 0.14 | 100.0 | MT-TQ-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387377.1 | ENST00000387377.1_1_51_+ | 1–51 | 29.00 | 11.42 | 0.35 | 100.0 | MT-TM-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387377.1 | ENST00000387377.1_1_31_+ | 1–31 | 95.00 | 37.40 | 1.14 | 68.84 | MT-TM-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387405.1 | ENST00000387405.1_1_24_+ | 1–24 | 11.00 | 8.59 | 0.13 | 100.0 | MT-TC-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_28_+ | 1–28 | 41.00 | 0.20 | 0.49 | 100.0 | MT-TY-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_32_+ | 1–32 | 267.00 | 1.30 | 3.20 | 90.51 | MT-TY-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_56_+ | 1–56 | 21.00 | 0.10 | 0.25 | 100.0 | MT-TY-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_37_+ | 1–37 | 30.00 | 0.15 | 0.36 | 69.77 | MT-TY-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_50_+ | 1–50 | 1.00 | 0.00 | 0.01 | 100.0 | MT-TY-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_65_+ | 1–65 | 19916.00 | 96.69 | 238.92 | 100.0 | MT-TY-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_58_+ | 1–58 | 467.00 | 34.54 | 5.60 | 100.0 | MT-TK-201 | Mt tRNA | HT-29 (Cell line) |