ENCFF534JKI

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR307FBN
Description: Part of ENCODE experiment ENCSR307FBN. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 435.00 0.98 1.80 100.0 SNHG5-273 lncRNA spleen (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 6456.00 14.54 26.75 100.0 SNHG5-273 lncRNA spleen (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 756.00 1.70 3.13 100.0 SNHG5-273 lncRNA spleen (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 1918.00 2.17 7.95 70.46 MEG8-251 lncRNA spleen (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 81077.00 91.84 335.99 98.1 MEG8-251 lncRNA spleen (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 942.00 1.07 3.90 33.76 MEG8-251 lncRNA spleen (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 476.00 0.54 1.97 95.77 MEG8-251 lncRNA spleen (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 2.00 0.00 0.01 100.0 MEG8-251 lncRNA spleen (Tissue)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 2.00 0.03 0.01 100.0 NCL-211 retained intron spleen (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 331.00 33.88 1.37 100.0 FMN2-209 protein coding CDS not defined spleen (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 4.00 0.06 0.02 100.0 LINC02739-203 lncRNA spleen (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 27.00 0.39 0.11 12.0 LINC02739-203 lncRNA spleen (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 548.00 7.97 2.27 100.0 LINC02739-203 lncRNA spleen (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 1942.00 28.26 8.05 100.0 LINC02739-203 lncRNA spleen (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 495.00 7.20 2.05 100.0 LINC02739-203 lncRNA spleen (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 198.00 2.88 0.82 88.0 LINC02739-203 lncRNA spleen (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 999.00 34.92 4.14 100.0 SNHG10-212 lncRNA spleen (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 2621.00 44.25 10.86 100.0 MIR222HG-206 lncRNA spleen (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 855.00 14.44 3.54 48.28 MIR222HG-206 lncRNA spleen (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 28.00 0.47 0.12 100.0 MIR222HG-206 lncRNA spleen (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 1199.00 63.74 4.97 100.0 RPSA-216 retained intron spleen (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 1875.00 55.15 7.77 97.3 MIR99AHG-370 lncRNA spleen (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 912.00 26.82 3.78 93.25 MIR99AHG-370 lncRNA spleen (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 318.00 98.15 1.32 100.0 HPS4-237 retained intron spleen (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 453.00 95.37 1.88 100.0 MEG8-253 lncRNA spleen (Tissue)