ENCFF534JKI

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR307FBN
Description: Part of ENCODE experiment ENCSR307FBN. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 39298.00 93.66 162.85 94.28 MIR22HG-212 lncRNA spleen (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 445.00 29.28 1.84 33.94 SNORD53B-201 snoRNA spleen (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 12.00 0.79 0.05 100.0 SNORD53B-201 snoRNA spleen (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 866.00 56.97 3.59 66.06 SNORD53B-201 snoRNA spleen (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 81.00 69.83 0.34 100.0 ENST00000578036 lncRNA spleen (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 928.00 76.25 3.85 100.0 RPL23A-207 protein coding spleen (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 368.00 93.40 1.53 100.0 MIR744-201 miRNA spleen (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 56.00 64.37 0.23 100.0 MIR378C-201 miRNA spleen (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 26483.00 82.33 109.75 89.99 MIR142HG-201 lncRNA spleen (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 34.00 0.11 0.14 100.0 MIR142HG-201 lncRNA spleen (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 554.00 1.72 2.30 7.83 MIR142HG-201 lncRNA spleen (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 285.16 0.04 1.18 58.8 RPL23A-208 retained intron spleen (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 221.79 0.03 0.92 52.06 RPL23A-208 retained intron spleen (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 669005.00 85.35 2772.42 90.47 RPL23A-208 retained intron spleen (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 109889.00 14.02 455.39 90.55 RPL23A-208 retained intron spleen (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 8.00 22.22 0.03 100.0 MIR133A1HG-202 lncRNA spleen (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 3653.00 4.30 15.14 74.7 RPL17-211 retained intron spleen (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 10400.00 12.23 43.10 46.2 RPL17-211 retained intron spleen (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 1117.00 1.31 4.63 100.0 RPL17-211 retained intron spleen (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 60028.00 70.59 248.76 95.82 RPL17-211 retained intron spleen (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 5022.00 5.91 20.81 90.75 RPL17-211 retained intron spleen (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 382.00 21.44 1.58 27.86 ENST00000582320 lncRNA spleen (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 148.00 8.31 0.61 100.0 ENST00000582320 lncRNA spleen (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 20.00 1.12 0.08 100.0 ENST00000582320 lncRNA spleen (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 15098.00 23.73 62.57 100.0 RPL17-214 retained intron spleen (Tissue)