ENCFF534JKI

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR307FBN
Description: Part of ENCODE experiment ENCSR307FBN. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 224.00 5.05 0.93 100.0 RPL7A-207 protein coding CDS not defined spleen (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 1391.00 31.38 5.76 100.0 RPL7A-207 protein coding CDS not defined spleen (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 2.00 40.00 0.01 100.0 RGS11-208 retained intron spleen (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 20079.00 80.95 83.21 96.09 NOP56-217 protein coding CDS not defined spleen (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 7.00 0.03 0.03 18.92 NOP56-217 protein coding CDS not defined spleen (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 5975.00 15.98 24.76 100.0 RABGGTB-213 protein coding CDS not defined spleen (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 8381.00 22.42 34.73 100.0 RABGGTB-213 protein coding CDS not defined spleen (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 629.00 1.68 2.61 100.0 RABGGTB-213 protein coding CDS not defined spleen (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 2074.00 5.55 8.59 63.12 RABGGTB-213 protein coding CDS not defined spleen (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 1212.00 3.24 5.02 36.88 RABGGTB-213 protein coding CDS not defined spleen (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 2706.00 7.24 11.21 85.61 RABGGTB-213 protein coding CDS not defined spleen (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 5649.00 73.12 23.41 100.0 GNL3-211 retained intron spleen (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 1451.00 18.78 6.01 100.0 GNL3-211 retained intron spleen (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 234.00 54.93 0.97 100.0 RPL5-205 retained intron spleen (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 14.00 0.23 0.06 100.0 ZBED9-AS1-201 lncRNA spleen (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 3303.00 90.69 13.69 100.0 RPS3A-206 retained intron spleen (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 20189.00 96.56 83.67 100.0 COX7C-203 protein coding spleen (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 5198.00 6.43 21.54 100.0 RACK1-229 protein coding spleen (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 7372.32 9.12 30.55 24.48 RACK1-229 protein coding spleen (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 31318.69 38.74 129.79 83.28 RACK1-229 protein coding spleen (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 28730.00 35.54 119.06 99.89 RACK1-229 protein coding spleen (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 353.00 6.82 1.46 98.33 RACK1-230 retained intron spleen (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 21.00 0.41 0.09 26.58 RACK1-230 retained intron spleen (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 282.00 1.42 1.17 100.0 RNA5SP486-201 rRNA pseudogene spleen (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 10984.00 90.83 45.52 100.0 SCARNA5-201 scaRNA spleen (Tissue)