ENCFF521RDG

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 179699.00 46.06 1824.12 96.76 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 4440.00 1.14 45.07 100.0 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 1219.00 0.31 12.37 60.83 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 1.00 0.00 0.01 100.0 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 104.00 0.03 1.06 100.0 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 1905.00 0.49 19.34 84.33 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 677.00 0.17 6.87 54.64 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 16704.00 95.08 169.56 100.0 RPS8-207 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 72.00 6.48 0.73 100.0 RPL7A-206 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 212.00 19.08 2.15 100.0 RPL7A-206 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 221.00 19.89 2.24 100.0 RPL7A-206 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 101040.00 34.69 1025.66 99.39 RPL21-209 retained intron OCI-LY7 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 562.00 0.19 5.70 100.0 RPL21-209 retained intron OCI-LY7 (Cell line)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 165.00 0.06 1.67 100.0 RPL21-209 retained intron OCI-LY7 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 184266.00 63.26 1870.48 96.33 RPL21-209 retained intron OCI-LY7 (Cell line)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 28.00 0.01 0.28 100.0 RPL21-209 retained intron OCI-LY7 (Cell line)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 99.00 0.09 1.00 100.0 RPL13A-212 retained intron OCI-LY7 (Cell line)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 1838.00 1.75 18.66 100.0 RPL13A-212 retained intron OCI-LY7 (Cell line)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 156.00 0.15 1.58 100.0 RPL13A-212 retained intron OCI-LY7 (Cell line)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 431.00 0.41 4.38 33.0 RPL13A-212 retained intron OCI-LY7 (Cell line)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 64090.00 61.10 650.58 99.13 RPL13A-212 retained intron OCI-LY7 (Cell line)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 1.00 0.00 0.01 100.0 RPL13A-212 retained intron OCI-LY7 (Cell line)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 12.00 0.01 0.12 100.0 RPL13A-212 retained intron OCI-LY7 (Cell line)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 25189.00 24.02 255.69 91.85 RPL13A-212 retained intron OCI-LY7 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 44.00 0.22 0.45 100.0 RPL7A-207 protein coding CDS not defined OCI-LY7 (Cell line)