ENCFF521RDG

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 21.00 0.10 0.21 100.0 RPL7A-207 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 44.00 0.22 0.45 100.0 RPL7A-207 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 4.00 0.02 0.04 100.0 RPL7A-207 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 27.00 1.24 0.27 100.0 RN7SL2-201 misc RNA OCI-LY7 (Cell line)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 125.00 5.76 1.27 29.0 RN7SL2-201 misc RNA OCI-LY7 (Cell line)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 510.00 6.01 5.18 100.0 NOP56-217 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 7288.00 85.93 73.98 99.25 NOP56-217 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 126.00 0.10 1.28 52.28 RABGGTB-213 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 33.00 0.03 0.33 100.0 RABGGTB-213 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 110214.00 90.02 1118.78 99.03 RABGGTB-213 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 22.00 0.02 0.22 34.92 RABGGTB-213 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 1283.00 1.05 13.02 100.0 RABGGTB-213 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 2505.00 2.05 25.43 100.0 RABGGTB-213 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 41.00 0.03 0.42 65.08 RABGGTB-213 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 8788.00 86.13 89.21 100.0 GNL3-211 retained intron OCI-LY7 (Cell line)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 457.00 4.48 4.64 100.0 GNL3-211 retained intron OCI-LY7 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 554.00 25.41 5.62 100.0 RPL5-205 retained intron OCI-LY7 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 1084.00 49.72 11.00 100.0 RPL5-205 retained intron OCI-LY7 (Cell line)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 7.00 3.33 0.07 100.0 ZBED9-AS1-201 lncRNA OCI-LY7 (Cell line)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 2770.00 77.94 28.12 100.0 RPS3A-206 retained intron OCI-LY7 (Cell line)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 8450.00 96.84 85.78 100.0 COX7C-203 protein coding OCI-LY7 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 42818.13 60.39 434.65 65.12 RACK1-229 protein coding OCI-LY7 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 22921.84 32.33 232.68 33.97 RACK1-229 protein coding OCI-LY7 (Cell line)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 253.00 0.36 2.57 76.67 RACK1-229 protein coding OCI-LY7 (Cell line)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 4.00 0.01 0.04 100.0 RACK1-229 protein coding OCI-LY7 (Cell line)