ENCFF521RDG

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 10660.00 84.05 108.21 100.0 SNORD42B-201 snoRNA OCI-LY7 (Cell line)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 13227.00 72.33 134.27 100.0 RNY4P25-201 misc RNA OCI-LY7 (Cell line)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 251.00 43.73 2.55 100.0 SNORD121A-201 snoRNA OCI-LY7 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 1686.00 44.35 17.11 64.06 SNORD126-201 snoRNA OCI-LY7 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 1868.00 49.13 18.96 78.55 SNORD126-201 snoRNA OCI-LY7 (Cell line)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 7257.00 86.19 73.67 89.49 SNORD124-201 snoRNA OCI-LY7 (Cell line)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 24.00 1.51 0.24 100.0 SNHG12-201 retained intron OCI-LY7 (Cell line)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 1648.00 42.89 16.73 92.38 RPL3-212 retained intron OCI-LY7 (Cell line)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 658.00 17.13 6.68 100.0 RPL3-212 retained intron OCI-LY7 (Cell line)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 74.00 97.37 0.75 100.0 SMC1A-204 retained intron OCI-LY7 (Cell line)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 74570.00 93.24 756.96 99.69 RABGGTB-208 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 156.00 17.09 1.58 100.0 DDX39B-219 retained intron OCI-LY7 (Cell line)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 79.00 8.65 0.80 85.87 DDX39B-219 retained intron OCI-LY7 (Cell line)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 133.00 14.57 1.35 100.0 DDX39B-219 retained intron OCI-LY7 (Cell line)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 4398.00 87.09 44.64 100.0 RPS8-206 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 610.00 5.00 6.19 100.0 RPL13-207 retained intron OCI-LY7 (Cell line)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 10126.00 83.02 102.79 99.85 RPL13-207 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 4440.00 1.14 45.07 100.0 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 1219.00 0.31 12.37 60.83 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 1.00 0.00 0.01 100.0 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 104.00 0.03 1.06 100.0 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 1905.00 0.49 19.34 84.33 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 766.00 0.20 7.78 57.51 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1219.00 0.31 12.37 60.77 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 947.00 0.24 9.61 60.17 EIF4A2-219 retained intron OCI-LY7 (Cell line)