ENCFF521RDG

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 14.00 7.07 0.14 100.0 Y_RNA.612-201 misc RNA OCI-LY7 (Cell line)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 19.00 0.11 0.19 100.0 SNORD71-201 snoRNA OCI-LY7 (Cell line)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 15967.00 90.02 162.08 98.09 SNORD71-201 snoRNA OCI-LY7 (Cell line)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 798.00 4.50 8.10 100.0 SNORD71-201 snoRNA OCI-LY7 (Cell line)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 595.00 76.97 6.04 95.66 MIR194-2HG-201 lncRNA OCI-LY7 (Cell line)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 161.00 20.83 1.63 74.19 MIR194-2HG-201 lncRNA OCI-LY7 (Cell line)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 7.00 0.61 0.07 100.0 LINC01783-201 lncRNA OCI-LY7 (Cell line)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 2.00 22.22 0.02 100.0 RPS7P15-201 processed pseudogene OCI-LY7 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 116.00 1.15 1.18 100.0 SNORD62B-201 snoRNA OCI-LY7 (Cell line)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 155.00 1.54 1.57 100.0 SNORD62B-201 snoRNA OCI-LY7 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 7097.00 70.43 72.04 85.65 SNORD62B-201 snoRNA OCI-LY7 (Cell line)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 43.00 0.43 0.44 100.0 SNORD62B-201 snoRNA OCI-LY7 (Cell line)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 37.00 0.37 0.38 100.0 SNORD62B-201 snoRNA OCI-LY7 (Cell line)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 61.00 93.85 0.62 100.0 MRPL32-203 nonsense mediated decay OCI-LY7 (Cell line)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 199.00 98.03 2.02 100.0 ENST00000436739 lncRNA OCI-LY7 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 3766.00 35.51 38.23 100.0 TMEM107-204 protein coding OCI-LY7 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 90.00 0.85 0.91 27.61 TMEM107-204 protein coding OCI-LY7 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 196.00 1.85 1.99 100.0 TMEM107-204 protein coding OCI-LY7 (Cell line)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 219.00 2.06 2.22 42.86 TMEM107-204 protein coding OCI-LY7 (Cell line)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 1731.00 44.38 17.57 100.0 SNHG16-201 lncRNA OCI-LY7 (Cell line)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 1034.00 26.51 10.50 55.53 SNHG16-201 lncRNA OCI-LY7 (Cell line)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 28522.00 94.21 289.53 96.88 SNORD105B-201 snoRNA OCI-LY7 (Cell line)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 1443.00 68.03 14.65 95.44 SNORD121B-201 snoRNA OCI-LY7 (Cell line)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 46.00 0.46 0.47 100.0 SNORD127-201 snoRNA OCI-LY7 (Cell line)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 9152.00 91.32 92.90 99.38 SNORD127-201 snoRNA OCI-LY7 (Cell line)