ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 2.00 0.11 0.00 100.0 NCL-216 retained intron hepatocyte (In vitro differentiated cells)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 561.00 38.14 0.47 100.0 FMN2-209 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 219.00 2.56 0.18 100.0 LINC02739-203 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 281.00 3.28 0.24 43.43 LINC02739-203 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 962.00 11.24 0.81 100.0 LINC02739-203 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 2921.00 34.12 2.45 100.0 LINC02739-203 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 525.00 6.13 0.44 100.0 LINC02739-203 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 366.00 4.28 0.31 56.57 LINC02739-203 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 3.00 30.00 0.00 100.0 MIR124-1HG-216 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 822.00 24.13 0.69 100.0 SNHG10-212 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 109853.66 39.01 92.03 39.61 SNHG19-202 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 166549.51 59.15 139.53 70.98 SNHG19-202 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 29.84 0.01 0.02 90.41 SNHG19-202 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 0.72 0.00 0.00 72.05 SNHG19-202 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 11393.00 57.11 9.54 100.0 MIR222HG-206 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 4761.00 23.87 3.99 85.95 MIR222HG-206 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 1049.00 5.26 0.88 100.0 MIR222HG-206 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_458_485_+ 458–485 2.00 1.05 0.00 100.0 MIR302CHG-205 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_313_335_+ 313–335 1.00 0.52 0.00 50.0 MIR302CHG-205 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_190_212_+ 190–212 9.45 4.95 0.01 24.87 MIR302CHG-205 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_313_333_+ 313–333 1.00 0.52 0.00 100.0 MIR302CHG-205 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_190_210_+ 190–210 23.56 12.34 0.02 65.45 MIR302CHG-205 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_493_514_+ 493–514 46.00 24.08 0.04 100.0 MIR302CHG-205 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_673_694_+ 673–694 19.00 9.95 0.02 95.0 MIR302CHG-205 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_458_478_+ 458–478 42.00 21.99 0.04 87.5 MIR302CHG-205 lncRNA hepatocyte (In vitro differentiated cells)