ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000688371.3 ENST00000688371.3_458_481_+ 458–481 9.00 4.71 0.01 40.91 MIR302CHG-205 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 76.00 14.87 0.06 100.0 RPSA-216 retained intron hepatocyte (In vitro differentiated cells)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 317.00 2.26 0.27 90.06 MIR99AHG-370 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 13398.00 95.68 11.22 99.1 MIR99AHG-370 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 1616.00 96.88 1.35 100.0 HPS4-237 retained intron hepatocyte (In vitro differentiated cells)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 5.00 4.00 0.00 100.0 MEG9-206 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 7.00 5.60 0.01 100.0 MEG9-206 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 35.00 28.00 0.03 100.0 MEG9-206 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 2455.00 12.60 2.06 100.0 DNAJC5-203 nonsense mediated decay hepatocyte (In vitro differentiated cells)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 16500.00 77.61 13.82 100.0 ENST00000707189 TEC hepatocyte (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 2340.00 0.80 1.96 100.0 MIR17HG-214 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 93586.84 31.83 78.40 35.26 MIR17HG-214 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 96.00 0.03 0.08 100.0 MIR17HG-214 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 511.00 0.17 0.43 100.0 MIR17HG-214 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 184474.64 62.74 154.54 66.17 MIR17HG-214 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 2221.00 0.76 1.86 100.0 MIR17HG-214 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 325.00 0.11 0.27 100.0 MIR17HG-214 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 754.00 0.26 0.63 100.0 MIR17HG-214 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 1697.00 0.58 1.42 100.0 MIR17HG-214 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 26187.00 2.09 21.94 100.0 SNHG32-223 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 3665.00 0.29 3.07 100.0 SNHG32-223 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 253.00 0.02 0.21 100.0 SNHG32-223 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 12129.00 0.97 10.16 59.24 SNHG32-223 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 1193466.00 95.36 999.83 100.0 SNHG32-223 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 243197.00 94.23 203.74 99.01 SNHG32-227 lncRNA hepatocyte (In vitro differentiated cells)