ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 6563.00 0.07 5.50 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 311000.00 30.58 260.54 100.0 SNHG14-315 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 344639.00 33.89 288.72 94.76 SNHG14-315 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 286491.00 28.17 240.01 91.64 SNHG14-315 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 4687.00 0.22 3.93 100.0 SNHG5-273 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 1062811.84 48.76 890.38 53.74 SNHG5-273 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 281.00 0.01 0.24 100.0 SNHG5-273 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 824.00 0.04 0.69 100.0 SNHG5-273 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 1011940.81 46.43 847.76 48.3 SNHG5-273 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 25020.00 1.15 20.96 92.45 SNHG5-273 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 73.00 0.00 0.06 100.0 SNHG5-273 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 5710.00 0.26 4.78 100.0 SNHG5-273 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 3379.00 0.16 2.83 100.0 SNHG5-273 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 14.00 0.00 0.01 77.78 SNHG5-273 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 16264.00 0.75 13.63 92.21 SNHG5-273 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 6336.00 13.42 5.31 58.42 SNHG14-323 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 46710.00 92.85 39.13 98.91 MEG8-251 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 58.00 0.12 0.05 37.91 MEG8-251 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 121.00 0.24 0.10 67.98 MEG8-251 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 1893.00 3.76 1.59 88.17 MEG8-251 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 6.00 0.01 0.01 100.0 MEG8-251 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 201196.00 81.44 168.55 94.85 SNHG14-336 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 38861.00 15.73 32.56 32.0 SNHG14-336 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 101711.00 88.89 85.21 97.86 SNHG14-341 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 834.00 19.73 0.70 100.0 NCL-211 retained intron hepatocyte (In vitro differentiated cells)