ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 103.00 0.28 0.09 100.0 HSPA8-215 retained intron hepatocyte (In vitro differentiated cells)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 1866.00 38.14 1.56 100.0 RPS2-215 retained intron hepatocyte (In vitro differentiated cells)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 447430.00 79.71 374.84 80.45 ENST00000548801 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 5681.00 26.77 4.76 100.0 ENST00000554988 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 89.00 0.42 0.07 100.0 ENST00000554988 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 6511.00 30.68 5.45 100.0 ENST00000554988 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 658.00 0.59 0.55 100.0 SNHG14-220 retained intron hepatocyte (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 52447.00 47.23 43.94 100.0 SNHG14-220 retained intron hepatocyte (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 52587.00 47.36 44.06 100.0 SNHG14-220 retained intron hepatocyte (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 981.00 0.88 0.82 100.0 SNHG14-220 retained intron hepatocyte (In vitro differentiated cells)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 1075.00 98.99 0.90 100.0 TEKT4P2-201 transcribed unprocessed pseudogene hepatocyte (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 307614.00 93.65 257.71 98.17 RPL4-202 retained intron hepatocyte (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 3594.00 1.09 3.01 100.0 RPL4-202 retained intron hepatocyte (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 1038.00 0.32 0.87 100.0 RPL4-202 retained intron hepatocyte (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 4347.00 1.32 3.64 100.0 RPL4-202 retained intron hepatocyte (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 97.00 0.03 0.08 100.0 RPL4-202 retained intron hepatocyte (In vitro differentiated cells)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 100.00 0.12 0.08 100.0 ENST00000563103 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 383.00 0.87 0.32 100.0 RPL4-207 retained intron hepatocyte (In vitro differentiated cells)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 39382.00 89.63 32.99 100.0 RPL4-207 retained intron hepatocyte (In vitro differentiated cells)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 11763.00 18.84 9.85 79.73 ENST00000565336 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 42431.00 67.95 35.55 95.21 ENST00000565336 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 662718.00 83.23 555.20 84.74 RBMX-210 retained intron hepatocyte (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 2100.00 0.26 1.76 100.0 RBMX-210 retained intron hepatocyte (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 1114.00 0.14 0.93 100.0 RBMX-210 retained intron hepatocyte (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 3228.00 0.41 2.70 100.0 RBMX-210 retained intron hepatocyte (In vitro differentiated cells)