ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 2797.00 21.18 2.34 100.0 RPL4-214 retained intron hepatocyte (In vitro differentiated cells)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 7366.00 55.78 6.17 100.0 RPL4-214 retained intron hepatocyte (In vitro differentiated cells)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 3855.47 18.57 3.23 37.7 POLG-DT-202 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 6975.60 33.60 5.84 72.83 POLG-DT-202 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 267.00 1.29 0.22 100.0 POLG-DT-202 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 2410.00 51.76 2.02 100.0 ENST00000570843 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 28.00 51.85 0.02 100.0 MIR497HG-207 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 213063.00 98.01 178.49 98.67 MIR22HG-212 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 677.00 0.36 0.57 50.86 SNORD53B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 174602.00 93.01 146.27 94.53 SNORD53B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 654.00 0.35 0.55 49.14 SNORD53B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 93.00 54.71 0.08 100.0 ENST00000578036 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 9165.00 92.69 7.68 100.0 RPL23A-207 protein coding hepatocyte (In vitro differentiated cells)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 2732.00 93.27 2.29 100.0 MIR744-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 128.00 67.72 0.11 100.0 MIR378C-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 26.00 20.97 0.02 26.8 MIR142HG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 1.00 0.81 0.00 100.0 MIR142HG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 12.00 9.68 0.01 12.77 MIR142HG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 219.00 1.25 0.18 100.0 SNORD3C-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 3996.38 0.16 3.35 59.2 RPL23A-208 retained intron hepatocyte (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 2745.40 0.11 2.30 51.75 RPL23A-208 retained intron hepatocyte (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 1903641.00 78.20 1594.79 89.53 RPL23A-208 retained intron hepatocyte (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 513509.00 21.09 430.19 91.69 RPL23A-208 retained intron hepatocyte (In vitro differentiated cells)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 8.00 1.59 0.01 100.0 MIR133A1HG-202 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 116405.00 24.19 97.52 95.17 RPL17-211 retained intron hepatocyte (In vitro differentiated cells)